Query= MSMg01no513_a21.b1 MSMg01no513_a21.b1 CHROMAT_FILE:
MSMg01no513_a21.b1 PHD_FILE: MSMg01no513_a21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:25 2005
(690 letters)
>mm_chr2_179959086_179960175
Length = 1090
Score = 1093 bits (565), Expect = 0.0
Identities = 647/695 (93%), Gaps = 35/695 (5%)
Strand = Plus / Plus
Query: 4 gaattccttcacctctcccctttctccaccccgacgaatccg-tttttcagctattcttt 62
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 196 gaattccttcaccgctcccctttctccaccccgacgaatccgttttttcagctattcttt 255
Query: 63 ccctcgccagcctccttccaggaacgtggaagcaggtccctagagaaagtagctaaagtt 122
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 256 ccctcgccagcctccttccaggaacgtggaagcaggtccctagagaaggtagctaaagtt 315
Query: 123 accaggccctaatggctcccaactccttaggtccctaacgtgaggcaggagtcctgc--- 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 accaggccctaatggctcccaactccttaggtccctaacgtgaggcaggagtcctgcggg 375
Query: 180 ----gggggggggacaacgtggcccacctgcaggctcagcctgaaaggcagggctcagga 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gggggggggggggacaacgtggcccacctgcaggctcagcctgaaaggcagggctcagga 435
Query: 236 gagtccttaggtactgaatccacatctcccgggagactgaagcccgagaacctaccacct 295
|||||||||||||| ||||||||||||||||||||||| |||||| ||| ||||||||||
Sbjct: 436 gagtccttaggtacagaatccacatctcccgggagactaaagccccagagcctaccacct 495
Query: 296 gctgggcagggggctcctccacgatggcccacaggtgttagcgctcagttaaaactttgc 355
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gctgggcagggggctcctccacgatggcccacaggtgttagcg----------------- 538
Query: 356 ctgcctgctctctccaccttcttctgaaggctcccagatcccaagcagagaagcttcttc 415
|||||||||| |||||||| | |||||||||||||||| ||||||||||||
Sbjct: 539 ---------ctctccacctccttctgaa-gttcccagatcccaagcaaagaagcttcttc 588
Query: 416 aacttttggctgagacagtgagacccaacaccaggagaaaccggcgatggtgcggcttcc 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 aacttttggctgagacagtgagacccaacaccaggagaaaccggcgatggtgcggcttcc 648
Query: 476 gcgctcattccgtccctatccgggaggccaacaggttcctgcctgtcccgggggaacaag 535
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 649 gcgctcattccgtccctatccgggaggccaacaggttcctgcctgtcccggggtaacaag 708
Query: 536 gagctcccgccccctcctcacagtcagcgagcaccctggccaagttccgcccacgcaggg 595
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 709 gagctcccgccccctcctcacagtcagcgggcaccctggccaagttccgcccacgcaggg 768
Query: 596 atcccggacttacggctgccggggactgatcaccggtcccctcctgcctaggtcaccccc 655
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 769 atcccggacttacggctgccgaggactgatcaccggtcccctcctgcctaggtcaccccc 828
Query: 656 ccactcccacccccgagcttcaccagccccagggg 690
|||| ||||||||||||||||||||||||||||||
Sbjct: 829 ccacccccacccccgagcttcaccagccccagggg 863
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space: 734400
Effective search space used: 734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no513_a21.g1 MSMg01no513_a21.g1 CHROMAT_FILE:
MSMg01no513_a21.g1 PHD_FILE: MSMg01no513_a21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:25 2005
(596 letters)
>mm_chr2_180168836_180169831
Length = 996
Score = 1067 bits (552), Expect = 0.0
Identities = 558/560 (99%)
Strand = Plus / Minus
Query: 37 gccatataaatgtgaggccctaagttctgatctccagcacgtgtgaatggtgaatggtca 96
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 996 gccatataaatgtgaggccctaagttctgatctccagcacgtgtgaatggtgaatggtca 937
Query: 97 tggtcatcgacctaaaattctgtgcactcaggaggcagaaacaggagatcccagagcaag 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936 tggtcatcgacctaaaattctgtgcactcaggaggcagaaacaggagatcccagagcaag 877
Query: 157 ctggctagctggactacagaccatgcctcaatatataggacagagaagaactgagaaaga 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 ctggctagctggactacagaccatgcctcaatatataggacagagaagaactgagaaaga 817
Query: 217 tgcccaacaacctctggcttactcttgcatgcatgcatgtgtatagctgcccccatatac 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 tgcccaacaacctctggcttactcttgcatgcatgcatgtgtatagctgcccccatatac 757
Query: 277 atacatagcatataggtcagaggataactttagcccctgtgcaaagcatttcctaaggtt 336
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 756 atacatagcatataggtcagaggataactttagcccctgtgcaaaacatttcctaaggtt 697
Query: 337 caactgcttgaggcctccttggcatgacctcctccatatgcatgcgttggtacccctatc 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 caactgcttgaggcctccttggcatgacctcctccatatgcatgcgttggtacccctatc 637
Query: 397 tatgacaggaagactggccgttgtatgcatgatggggggctcaggagcagggccctgtct 456
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 636 tatgacaggaagactggccgttgtatgcatgatggggggctcaggagcagggctctgtct 577
Query: 457 ggctgccttatttgctgtgacatcactgtccattcaaccgcagtccctcaatgctgggca 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 ggctgccttatttgctgtgacatcactgtccattcaaccgcagtccctcaatgctgggca 517
Query: 517 gtgaatcctcatcctagccttccctttctcatgagacatttctcttactccttggctaca 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gtgaatcctcatcctagccttccctttctcatgagacatttctcttactccttggctaca 457
Query: 577 tagagacactgcgtgtgtgg 596
||||||||||||||||||||
Sbjct: 456 tagagacactgcgtgtgtgg 437
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space: 577796
Effective search space used: 577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
