BAC Information

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BAC

Clone NameMSMg01-513I06
Chromosome2 (Build37)
Map Location 128,901,166 - 128,901,739
singlet/doubletsinglet
Overlap geneTtl
Upstream geneAcoxl, Bcl2l11, LOC100043424, LOC100043729, LOC383791, LOC100043730, Gm355, Anapc1, Mertk, Tmem87b, 1600015H20Rik, Zc3h8, LOC100043735, LOC100043736, Zc3h6, LOC668894
Downstream geneLOC100043738, Rpo1-2, Chchd5, LOC545461, LOC100043431, Slc20a1, A730036I17Rik, LOC671466, Ckap2l, Il1a, Il1b, OTTMUSG00000015529, LOC668896, F830045P16Rik, Sirpa, Pdyn, Ppia-ps2_1620.1, Stk35, Tgm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-513I06.T7 (MSMg01no513_i06.b1)MSMg01-513I06.TJ (MSMg01no513_i06.g1)
ACCAG586218AG586219
length740746
length of high quality
(start - end)
654 (39 - 692)671 (67 - 737)
definitionCHROMAT_FILE: MSMg01no513_i06.b1 PHD_FILE: MSMg01no513_i06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:44:02 2005CHROMAT_FILE: MSMg01no513_i06.g1 PHD_FILE: MSMg01no513_i06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:44:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
TACTTCCTGCTCCCTGTGCCTTCTACCCTCTGTCTGTCTGTTGTCTGGAT
TTGAACCTGCCTATGTGCCTGTATCAGTTTCTATGGCATGCGTGTGTGTG
TTGTGTATGTCTGTATGAATGTGTGTTTCCCATTAAAGGACTTTATATTT
ATTGAACAGCACAGAAAACATCTCATGGGGAAAAAATGAGATACTTTACC
AAAAACTTAAACAGAGTTTTATAAGGGATTAAGTCACTGACCCCAACTGA
CCCAGACAACAAATAGTATTACAAACATCATTGTTTACCATGCCACATGC
AAATGTTGTGCTCAACATTAGGGTGAATATTCAGTTTATTAAGTTGCTTT
CAACCTCTATTGTTGCCACTTTCTACAGATGGGTGTTAGAGCACAGGTGC
ATTGCAGATGGGTATTAGATAGAACACAGGTGCATTGCAGATGGGTGTTA
GAGCACAGCTGCATTACAGATGAGTGTTAGAGCACAGCTGCATTGCAGAC
GGGTGTCAGAGCACAGGTGCATTGCAGACGGGTGTCAGAGCACAGGTGCA
TCACAGACAGGTGTCAGAGCACAGCTGCATTACAGATGGGTGTTAGAGCA
CAGGTGCATTACAGATGAGTGTTAGAGCACAGCTGCATTGCAGACGAGTG
TTAAAGCACAGCTGCATTGCAGACGGGTGTTAGAGCACAG
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCTCTCATCTGTCCTGGAGTTACTGACCGGAAGT
TGGATGCCATTCTGCGCCGGAGCGACTGGCGTCTTGAGGTTAGTTGGATA
AATCACATATGACTCGGGGAACCATGAGCAGGACTCAGACAGTTCCGGAC
TGGTCTTGACTAGCCTGGCAGATGACAGAGTGTCAGTGTCTGTTCTCAGT
AAGCTGTCACCTTGCTCAGAAAGGCCGGATGCTTCCCTCCAAAGCTTTTC
CAGAAGCTAAGACCCAGTCAGTTTTCTTTTGTATTCACCCTGAGCCTCCA
AGGCCAGGCCTCCAATGCATCACACTCTGGTGTGATTCCAAAGCCATGTC
CTGGTTAATTCAAAGGCTCACGGCAGGCTGGGAGTGGAGGGTCCTAGGTT
TAATCCTCACCACCACATAAACCAGACTTGGTGGTCCATGCCTATAATCC
TACTATTTGAAGGGACAGAAGAAGAAAGGTCAGAAGTCAAGGTCTGGAGA
CCTGCATGAACTATGAGAGACTCTGGCTCAAAACAAACAAGCAAAGAAAT
AACAAAGCAACATCAAAATCCTCAAGAATCAGAGTTTAACTCTTTTTAAA
ATGTATCCATTTAAAAACTCAATGTAGCCCTACACTGACTACCTTTCAAC
CAATGTTATACTAGTTAGATCCAAATAAAAATGGNAGCACACCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no513_i06.g1 MSMg01no513_i06.g1 CHROMAT_FILE:
MSMg01no513_i06.g1 PHD_FILE: MSMg01no513_i06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:02 2005
         (671 letters)



>mm_chr2_128901166_128902236
          Length = 1071

 Score = 1064 bits (550), Expect = 0.0
 Identities = 568/574 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctctcatctgtcctggagttactgaccggaagttggatgccattctgcgccggagcgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 tctctcatctgtcctggagttactgaccggaagttggatgccattctgcgccggagcgac 515

                                                                       
Query: 61  tggcgtcttgaggttagttggataaatcacatatgactcggggaaccatgagcaggactc 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 514 tggcgtcttgaggttagttggataaatcacatacgactcggggaaccatgagcaggactc 455

                                                                       
Query: 121 agacagttccggactggtcttgactagcctggcagatgacagagtgtcagtgtctgttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 agacagttccggactggtcttgactagcctggcagatgacagagtgtcagtgtctgttct 395

                                                                       
Query: 181 cagtaagctgtcaccttgctcagaaaggccggatgcttccctccaaagcttttccagaag 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 394 cagtaagctgtcaccttgctcagaaaggccagatgcttccctccaaagcttttccagaag 335

                                                                       
Query: 241 ctaagacccagtcagttttcttttgtattcaccctgagcctccaaggccaggcctccaat 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 334 ctaagacccagtcagttttcttttgtattcaccctgagcctccaaggccaggcctctaat 275

                                                                       
Query: 301 gcatcacactctggtgtgattccaaagccatgtcctggttaattcaaaggctcacggcag 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 274 gcatcacactctggtgtgattccaaagccatgtcctggttaattaaaaggctcacggcag 215

                                                                       
Query: 361 gctgggagtggagggtcctaggtttaatcctcaccaccacataaaccagacttggtggtc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 gctgggagtggagggtcctaggtttaatcctcaccaccacataaaccagacttggtggtc 155

                                                                       
Query: 421 catgcctataatcctactatttgaagggacagaagaagaaaggtcagaagtcaaggtctg 480
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 catgcctataatcctagtatttgaagggacagaagaagaaaggtcagaagtcaaggtctg 95

                                                                       
Query: 481 gagacctgcatgaactatgagagactctggctcaaaacaaacaagcaaagaaataacaaa 540
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94  gagacctgcattaactatgagagactctggctcaaaacaaacaagcaaagaaataacaaa 35

                                             
Query: 541 gcaacatcaaaatcctcaagaatcagagtttaac 574
           ||||||||||||||||||||||||||||||||||
Sbjct: 34  gcaacatcaaaatcctcaagaatcagagtttaac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space:   701321
Effective search space used:   701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)