Query= MSMg01no513_n01.b1 MSMg01no513_n01.b1 CHROMAT_FILE:
MSMg01no513_n01.b1 PHD_FILE: MSMg01no513_n01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:27 2005
(619 letters)
>mm_chr2_31589109_31590126
Length = 1018
Score = 721 bits (373), Expect = 0.0
Identities = 603/819 (73%), Gaps = 211/819 (25%)
Strand = Plus / Plus
Query: 11 acctcacccttcactgctcttggtccctcatgttccttcagcacaatatttatgagaagg 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acctcacccttcactgctcttggtccctcatgttccttcagcacaatatttatgagaagg 60
Query: 71 atgggagctcggagcaggctggcctggggagtgtttctcacatggtgtctgtgagcatcc 130
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 61 atgggagctcggagcaggctggcctggggagtgtttctcacatggtgtctgtgagcgtcc 120
Query: 131 tacccatttacagccctaggaaggagtcattccctggcagacgcagtgggttctactcag 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tacccatttacagccctaggaaggagtcattccctggcagacgcagtgggttctactcag 180
Query: 191 atgctctggcctccaacagccgctttcacttactgccattgtttaaacaagtgctgttcc 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atgctctggcctccaacagccgctttcacttactgccattgtttaaacaagtgctgttcc 240
Query: 251 tggaagtggtttcagaatagtctgtccttgtagctcgctgctcctttgctcttgttttt- 309
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tggaagtggtttcagaatagtctgtccttgtagctcgctgctcctttgctcttgtttttt 300
Query: 309 ------------------------------------------------------------ 309
Sbjct: 301 tttttttttttttttttttttaaagatttatttattatatgtaagtacactgtagctgtc 360
Query: 309 ------------------------------------------------------------ 309
Sbjct: 361 ctcagacactccagaagagggcgtcagatctcgttacggatggttgtgagccaccatgtg 420
Query: 309 ------------------------------------------------------------ 309
Sbjct: 421 gttgctgggatttgaacttcggaccttcggaagagcagtcgggtgctcttacccactgag 480
Query: 310 -----------------------------gaaagtgttttcttaatgataagcagaagaa 340
|||||||||||||||||||||||||||||||
Sbjct: 481 ccatctcaccagcccctgctcttgtttttgaaagtgttttcttaatgataagcagaagaa 540
Query: 341 gcccaagcacagcacacgaagactctgctagtccagcctccacctgctgacttgctatag 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gcccaagcacagcacacgaagactctgctagtccagcctccacctgctgacttgctatag 600
Query: 401 tcagtagtgttgcgatttagatctctttattttataaaactaaagagattctttggttgc 460
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 601 tcagtagtgttgcgatttagatctctttattttataaagctaaagagattctttggttgc 660
Query: 461 ctggcacccccattgcgcaccattgaggagctctgaggtctgaaagtcatcttgaacagt 520
|||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ctggcacccc-actgcccaccattgaggagctctgaggtctgaaagtcatcttgaacagt 719
Query: 521 gatagagaatgagcttttattactttgtaaatataaaaaatccaacaagagccagagatg 580
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 720 gatagagaatgagcttttattactttgtaaatataaaaaatccaacaagagccggagatg 779
Query: 581 ggctacctaagttgttaacatgtttttaagtgacattta 619
|||||||||||||||||||||||||||||||||||||||
Sbjct: 780 ggctacctaagttgttaacatgtttttaagtgacattta 818
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1018
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1008
Effective search space: 613872
Effective search space used: 613872
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no513_n01.g1 MSMg01no513_n01.g1 CHROMAT_FILE:
MSMg01no513_n01.g1 PHD_FILE: MSMg01no513_n01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:27 2005
(466 letters)
>mm_chr2_31771084_31771949
Length = 866
Score = 775 bits (401), Expect = 0.0
Identities = 410/413 (99%)
Strand = Plus / Minus
Query: 1 acagaactggcctgtgtatccctggggacataagcaggtctccacccaagaggctggagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 acagaactggcctgtgtatccctggggacataagcaggtctccacccaagaggctggagg 354
Query: 61 ggcaagctcacgctggggccgggccgatgtgagctgaacttcacacaagagcacttggcc 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ggcaagctcacgctggggccaggccgatgtgagctgaacttcacacaagagcacttggcc 294
Query: 121 tgcagaatgagaagcaaggggggacctgcatccatgtccagtcgatacttcctgagaatc 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 293 tgcagaatgagaagcaaggggggacctgcatccatgtccagtcgatacttcctgagaacc 234
Query: 181 cacaatggggctcatgcatgcaaaggggtcaactgtttgtttgagacagggtgttagctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 233 cacaatggggctcatgcatgcaaaggggtcaactgtttgtttgagacagggtgttcgctg 174
Query: 241 tatagcctgtgcagtattcaagcttgcgatcctctggccttgacctcttaagtgctggga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 tatagcctgtgcagtattcaagcttgcgatcctctggccttgacctcttaagtgctggga 114
Query: 301 ttacaggcatgaattactgctacgccaggcttgaagaacaattttaaaattaacagtcaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 ttacaggcatgaattactgctacgccaggcttgaagaacaattttaaaattaacagtcaa 54
Query: 361 ggccgggcatggtggtgcatgcctttaatcccagcactcgggaggcagaggca 413
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53 ggccgggcatggtggtgcatgcctttaatcccagcactcgggaggcagaggca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space: 390336
Effective search space used: 390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
