XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCACA
TTCTTGCAAGTAAGAAGTCATTTCGTAAATGTTTAGACAAGACCATCTAA
TAGTAATATTTTGCACAGTGTGGACAAAGGCTCAATGGCTTTCAAGAGAG
CACCTCAGTTAACCTATTATGGAAGAAGCAAAGCTGCATCCTCTGTAAGC
TACTCTAACCTCTAATAATCTACACTGTCAATAAACCAGTTAAACTGCTG
CTTTGTCAGATCCCTGGGTCAAGAAGTATAAGTGTGGATTGCCATTCTCC
TTTCTACATTGTGCACTACATATCAGTGTAAAATGATACTCTGTTCAATA
TTTTATATGACTGAAGGATGATGCTAGAGTTGAATTTATTGCCACGCATA
CTTGAAACTAAATCATGTAATACCGGAGATACTGTTTCCAAGTTATCAGC
TAGCATAACTGATGGAAAGACATTTTATATAAAAATTCATTTTGGTCTCA
TTTTTCATTTGTTAGCTTATTGCTTTATAGCTACCTAAAATATTTTATAT
CTTGAAAAAATTGACATCTTCACATAGAATCTAATTCAGTTGGAGTTGGA
CAAGGAAAAGAAAACCAAGACTTGCTCCTAGTAGTTTAAATTTTTTAGTT
CAGAGCTTTAGCTTGGAGTTGCTATTATTTGGGGAAGAAGTATTTATCTT
TGGGACAGAATTTGATGTCTTGGTGCAAAGAGTTTTCAGTATGGTGGAGA
AAAAAATCAGGGTAGAATAAN

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTTCTTTATGTCCTCTACCATCATCATGAGATA
TGCTTTTAAATCCAGGTCTACCTTTTCAGGTGTGTTAGGGTGTCCTGGAT
TGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAGTGGTCCTGGCTT
CTGTTAGTAGGATTCTTACGTTTACCTTTCGCCATCTGGCAATCTCTGGA
GTTAGTTGTTATAGTTGTCTTTGTTAAAAGATTGTTCCTCTGTTGATTTT
GTTACCCTCTATCAGCAGGCGTGGGAGACAAGCTCTCTTCTCTGAGTTTC
AGTGGTCAGAGCAGTCTCTGTAGGCAAGCTCTCCTCTCTCAGGGAAGGTG
TACAGTTATCTGGTGTTTGGACCTCCTCCTGGCTGAAGGTGAAGGCCCAA
AACAGGATCTTTCCCAGAAGCTGTGTTGCTTTGGCCAGGAAGGTGGCCAG
TTGTCTGGAGTCGAAGATGTCGCAGCCTCAGAAGCTCTGTGGCTCTTGCC
GGGAAGGTGGCTGGTTGTCTGGAGCTGAGGATGGTGCCGCCCCAGAATCT
CTGCGACTCTCTCGCCCGTCCCAGAAACGGCTGGCACTCTGTATTCCACA
CGGTCACCCGTGCAGCCTGCCCTCCGAGGAGTCCCGGAGCCAAGAAGGCT
CCCACCGGCGCCTGTGCCACAAACCTCTCAGGCCAGGCAGACCCCCGTGC
TCTCACCAGGGAGGG

Query= MSMg01no513_o24.b1 MSMg01no513_o24.b1 CHROMAT_FILE:
MSMg01no513_o24.b1 PHD_FILE: MSMg01no513_o24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:38 2005
         (645 letters)



>mm_chr2_77916831_77917876
          Length = 1046

 Score = 1141 bits (590), Expect = 0.0
 Identities = 629/642 (97%), Gaps = 1/642 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcc-acattcttgcaagtaagaagtcatttcgtaaatgtttagacaagaccatcta 63
           ||||||| | |||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 846 gaattccaatattcttgcaagtaagaagtcatctcataaatgtttagacaagaccatcta 787

                                                                       
Query: 64  atagtaatattttgcacagtgtggacaaaggctcaatggctttcaagagagcacctcagt 123
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 atagtaatgttttgcacagtgtggacaaaggctcaatggctttcaagagagcacctcagt 727

                                                                       
Query: 124 taacctattatggaagaagcaaagctgcatcctctgtaagctactctaacctctaataat 183
           |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 726 taacctattatgaaagaagcaaagctgcatcccctgtaagctactctaacctctaataat 667

                                                                       
Query: 184 ctacactgtcaataaaccagttaaactgctgctttgtcagatccctgggtcaagaagtat 243
           |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 666 ctacactgtcaataaaccagttaaactgctgcgttgtcagatccctgggtcaggaagtat 607

                                                                       
Query: 244 aagtgtggattgccattctcctttctacattgtgcactacatatcagtgtaaaatgatac 303
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 aagcgtggattgccattctcctttctacattgtgcactacatatcagtgtaaaatgatac 547

                                                                       
Query: 304 tctgttcaatattttatatgactgaaggatgatgctagagttgaatttattgccacgcat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 tctgttcaatattttatatgactgaaggatgatgctagagttgaatttattgccacgcat 487

                                                                       
Query: 364 acttgaaactaaatcatgtaataccggagatactgtttccaagttatcagctagcataac 423
           |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 486 acttgagactaaatcatgtagtaccggagatactgtttccaagttatcagctagcataac 427

                                                                       
Query: 424 tgatggaaagacattttatataaaaattcattttggtctcatttttcatttgttagctta 483
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tgatgggaagacattttatataaaaattcattttggtctcatttttcatttgttagctta 367

                                                                       
Query: 484 ttgctttatagctacctaaaatattttatatcttgaaaaaattgacatcttcacatagaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ttgctttatagctacctaaaatattttatatcttgaaaaaattgacatcttcacatagaa 307

                                                                       
Query: 544 tctaattcagttggagttggacaaggaaaagaaaaccaagacttgctcctagtagtttaa 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tctaattcagttggagttggacaaggaaaagaaaaccaagacttgctcctagtagtttaa 247

                                                     
Query: 604 attttttagttcagagctttagcttggagttgctattatttg 645
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 attttttagttcagagctttagcttggagttgctattatttg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1046
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1036
Effective search space:   657860
Effective search space used:   657860
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)