Query= MSMg01no514_k12.b1 MSMg01no514_k12.b1 CHROMAT_FILE:
MSMg01no514_k12.b1 PHD_FILE: MSMg01no514_k12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:38 2005
(667 letters)
>mm_chr2_14554067_14555130
Length = 1064
Score = 1212 bits (627), Expect = 0.0
Identities = 656/667 (98%), Gaps = 3/667 (0%)
Strand = Plus / Plus
Query: 1 gttttcttccgtgttggttttagtccttactttaggtggtggccagctggtttccaggag 60
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 gttttcttccatgttggttttagtccttactttaggtggtagccagctggtttccaggag 260
Query: 61 ctttatgagtaggctatctagggcatctttgtggtccaactcaaaggcttaatttgaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttatgagtaggctatctagggcatctttgtggtccaactcaaaggcttaatttgaaaa 320
Query: 121 ttatttatccacagttttggtttcatctagtcttaggccaggcctcaactgtgagctcac 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttatttttccacagttttggtttcatctagtcttaggccaggcctcaactgtgagctcac 380
Query: 181 tgagggatcagttgtatacaagtcacatgatctaaatttaaggagaggagccttttctca 240
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 tgagggatcagttgtatacaagtcacatgaactaaatttaaggagaggagccttttctca 440
Query: 241 gaggactgtttccagagaaagaatgaacggacgcaggataggagcagaagaactgatatc 300
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 441 gaggactgtttccagagaaagaatgaacggacacaggataggagc---agaactgatatc 497
Query: 301 tgttctattttgagaatgaatgaacatgttgatgtgttctcagtttccttggaatggctt 360
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 498 tgttctattttgagaatgaatgaacatgttgatgtgttctcagtttccttgggatggctt 557
Query: 361 atgaaaataccgagtcttagatatagcttagggaatgccattggaacccttctaggctta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 atgaaaataccgagtcttagatatagcttagggaatgccattggaacccttctaggctta 617
Query: 421 tacaaagtattctgtgctcttctctttctaagaacaaatggactgctaatgtgcctacat 480
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tacaacgtattctgtgctcttctctttctaagaacaaatggactgctaatgtgcctacat 677
Query: 481 gaacctgtgaaaatatatcttcgcagataaattgtgaattggtatgattttcttctgata 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 678 gaacctgtgaaaatatatcttcgcagataaattgtgaattggtatgattttcttctgtta 737
Query: 541 caaatatatgagagagaaataataaagaggatcaaaattgactttgattcactgttttaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 caaatatatgagagagaaataataaagaggatcaaaattgactttgattcactgttttaa 797
Query: 601 aggtttaaggatatggtaggtaggtaggctccattgctaaagtcctaggggaattagaat 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 aggtttaaggatatggtaggtaggtaggctccattgctaaagtcctaggggaattagaat 857
Query: 661 atcttgg 667
|||||||
Sbjct: 858 atcttgg 864
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1064
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1054
Effective search space: 692478
Effective search space used: 692478
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no514_k12.g1 MSMg01no514_k12.g1 CHROMAT_FILE:
MSMg01no514_k12.g1 PHD_FILE: MSMg01no514_k12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:38 2005
(667 letters)
>mm_chr2_14722310_14723376
Length = 1067
Score = 1234 bits (638), Expect = 0.0
Identities = 659/666 (98%)
Strand = Plus / Minus
Query: 1 ctgaggctttacaatggtgagtgtgaaacattgatctaaaagtagggttcctctcagcag 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 866 ctgaggctttacaatggtgagtgtgaagcattgatctaaaagtagggttcctctcagcag 807
Query: 61 agaaactcaccctcccatgctaacagcacatcttccagaggtcttgtgaggaataagcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 agaaactcaccctcccatgctaacagcacatcttccagaggtcttgtgaggaataagcag 747
Query: 121 gtaacctatatcaaagactaatcacagcatcccttgataaacagtgatgtttaaaagcac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 gtaacctatatcaaagactaatcacagcatcccttgataaacagtgatgtttaaaagcac 687
Query: 181 tcatcctgcattctgctcaccaacttcccaatggtctctccacgcatacttaataaatac 240
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 686 tcatcctgcattctgctcaccaacttcccaatggtctctccatgcatacttaataaatac 627
Query: 241 gtgtacctgggtcatgtcaagaaccttctttattagagcatgagccttgattctacttat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gtgtacctgggtcatgtcaagaaccttctttattagagcatgagccttgattctacttat 567
Query: 301 ttggcaaactctaacttatatcgagtcccaattgaagtttcccctcttttcagaggttgt 360
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 566 ttggcaaactctaacttatatcgaatcccaattgaagtttcccctcttttcagaggttgt 507
Query: 361 ctctgaccttttcaaggagaaaacctcccttcattatccactgcatattcctctacagca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ctctgaccttttcaaggagaaaacctcccttcattatccactgcatattcctctacagca 447
Query: 421 ccagccactgtgagatgcaaatatttgtctataatatacttcagttgcctgttactcaga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ccagccactgtgagatgcaaatatttgtctataatatacttcagttgcctgttactcaga 387
Query: 481 gcttcacatgagtaggtgctgtgtccattcatgcctgggctgtaacacactgatgatgtc 540
||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 386 gctccacatgaggaggtgctgtgtccattcatgcctgggctgtaatacactgatgatgtc 327
Query: 541 ctataaatatttgatggatgactgcatgatttattaatttgtggcaagttggactattca 600
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 326 ctataaatatttgatggatgactgcatgatttattaattcgtggcaagttggactattca 267
Query: 601 aatttcatttactctcctggctgttggtctcatccatgtgatcaggcaaatgtttacaat 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aatttcatttactctcctggctgttggtctcatccatgtgatcaggcaaatgtttacaat 207
Query: 661 ggcact 666
||||||
Sbjct: 206 ggcact 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space: 694449
Effective search space used: 694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
