Query= MSMg01no515_g04.b1 MSMg01no515_g04.b1 CHROMAT_FILE:
MSMg01no515_g04.b1 PHD_FILE: MSMg01no515_g04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:41 2005
(462 letters)
>mm_chr2_118112338_118113199
Length = 862
Score = 859 bits (444), Expect = 0.0
Identities = 460/470 (97%), Gaps = 8/470 (1%)
Strand = Plus / Plus
Query: 1 ggaattctctaaagcattccgcattagtttggtgatagtgactcaagaaaacatcaacag 60
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggaattctctaaagcactctgcattagtttggtgatagtgactcaagaaaacatcaacag 252
Query: 61 tgatcacacacacacacacacacacacacacacac--------ggactcccacttattca 112
||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 253 tgatcacacacacacacacacacacacacacacacacacacacggactcccacttattca 312
Query: 113 ggataagagttgtttatactgatgccaccagtcaccatggtgataagctgaacaataatg 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ggataagagttgtttatactgatgccaccagtcaccatggtgataagctgaacaataatg 372
Query: 173 atttatgagaatcctcctgatttggaagcctttcgtcactggtacacagatttgagtcta 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 atttatgagaatcctcctgatttggaagcctttcgtcactggtacacagatttgagtcta 432
Query: 233 accaaagcatctttctttacatagtgttacaggcaagacttaaaaatatgctcaggatct 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 accaaagcatctttctttacatagtgttacaggcaagacttaaaaatatgctcaggatct 492
Query: 293 attaatgtaatagtccactggaagatattgtctatgaagagatgtacacattgcggtata 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 attaatgtaatagtccactggaagatattgtctatgaagagatgtacacattgcggtata 552
Query: 353 tttgattttcactgctagaagagtctttatcccttaaagaacttctcacaaataaattat 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tttgattttcactgctagaagagtctttatcccttaaagaacttctcacaaataaattat 612
Query: 413 tccctttgtgagaatcaaaatcctgaggattttcatgttgttttttgaat 462
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 tccctttgtgagaatcaaaatcctgaggattttcatgttgttttttgaat 662
Score = 60.7 bits (31), Expect = 2e-13
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 65 cacacacacacacacacacacacacacacac 95
|||||||||||||||||||||||||||||||
Sbjct: 693 cacacacacacacacacacacacacacacac 663
Score = 60.7 bits (31), Expect = 2e-13
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 65 cacacacacacacacacacacacacacacac 95
|||||||||||||||||||||||||||||||
Sbjct: 695 cacacacacacacacacacacacacacacac 665
Score = 60.7 bits (31), Expect = 2e-13
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 65 cacacacacacacacacacacacacacacac 95
|||||||||||||||||||||||||||||||
Sbjct: 697 cacacacacacacacacacacacacacacac 667
Score = 60.7 bits (31), Expect = 2e-13
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 65 cacacacacacacacacacacacacacacac 95
|||||||||||||||||||||||||||||||
Sbjct: 699 cacacacacacacacacacacacacacacac 669
Score = 60.7 bits (31), Expect = 2e-13
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 65 cacacacacacacacacacacacacacacac 95
|||||||||||||||||||||||||||||||
Sbjct: 701 cacacacacacacacacacacacacacacac 671
Score = 60.7 bits (31), Expect = 2e-13
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 65 cacacacacacacacacacacacacacacac 95
|||||||||||||||||||||||||||||||
Sbjct: 703 cacacacacacacacacacacacacacacac 673
Score = 60.7 bits (31), Expect = 2e-13
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 65 cacacacacacacacacacacacacacacac 95
|||||||||||||||||||||||||||||||
Sbjct: 705 cacacacacacacacacacacacacacacac 675
Score = 60.7 bits (31), Expect = 2e-13
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 65 cacacacacacacacacacacacacacacac 95
|||||||||||||||||||||||||||||||
Sbjct: 707 cacacacacacacacacacacacacacacac 677
Score = 60.7 bits (31), Expect = 2e-13
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 65 cacacacacacacacacacacacacacacac 95
|||||||||||||||||||||||||||||||
Sbjct: 709 cacacacacacacacacacacacacacacac 679
Score = 58.7 bits (30), Expect = 8e-13
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 65 cacacacacacacacacacacacacacaca 94
||||||||||||||||||||||||||||||
Sbjct: 691 cacacacacacacacacacacacacacaca 662
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 11
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space: 385104
Effective search space used: 385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no515_g04.g1 MSMg01no515_g04.g1 CHROMAT_FILE:
MSMg01no515_g04.g1 PHD_FILE: MSMg01no515_g04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:41 2005
(674 letters)
>mm_chr2_118294114_118295187
Length = 1074
Score = 845 bits (437), Expect = 0.0
Identities = 437/437 (100%)
Strand = Plus / Minus
Query: 238 aacactgtcagatgtcccagtgggaacaaaactgctacttgttgagaattactgacatct 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1074 aacactgtcagatgtcccagtgggaacaaaactgctacttgttgagaattactgacatct 1015
Query: 298 ccttaaatttaagtgttttctgtcttctggttgtttttgagacagggcttcatggatccc 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1014 ccttaaatttaagtgttttctgtcttctggttgtttttgagacagggcttcatggatccc 955
Query: 358 atgcaggacttgaacttactatgtagcaggggctgaccttgaactgacatcccaagtgct 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 954 atgcaggacttgaacttactatgtagcaggggctgaccttgaactgacatcccaagtgct 895
Query: 418 gggattgtaggtatttgtcaggattataatacctagatctgtttgttttgatatgagcat 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 894 gggattgtaggtatttgtcaggattataatacctagatctgtttgttttgatatgagcat 835
Query: 478 gtatgagttgtgaagatgtaagaccttttctcaccccactgcccttttatagtctcccag 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 gtatgagttgtgaagatgtaagaccttttctcaccccactgcccttttatagtctcccag 775
Query: 538 aagtaactacagtcaaacatcttgtacagtcctccagatgttttctatatgtaagttgca 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 aagtaactacagtcaaacatcttgtacagtcctccagatgttttctatatgtaagttgca 715
Query: 598 tattttgccataatactctctatcccataatactctctattccatggcggacattcttcc 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 tattttgccataatactctctatcccataatactctctattccatggcggacattcttcc 655
Query: 658 actaaagccctgtagag 674
|||||||||||||||||
Sbjct: 654 actaaagccctgtagag 638
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space: 706496
Effective search space used: 706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
