Query= MSMg01no515_h08.b1 MSMg01no515_h08.b1 CHROMAT_FILE:
MSMg01no515_h08.b1 PHD_FILE: MSMg01no515_h08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:47 2005
(654 letters)
>mm_chr2_71621561_71622614
Length = 1054
Score = 1152 bits (596), Expect = 0.0
Identities = 633/650 (97%), Gaps = 8/650 (1%)
Strand = Plus / Plus
Query: 5 gaattcttacaccattctctccatccatacacctatttatctctttctatctctgcctct 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttacaccactctctccatccatacacctatttatctctttctatctctgcctct 264
Query: 65 tctctcagtcagctctctatataccacaggacgacctgcctggggttggtagcatcctcg 124
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 265 tctctcagtcagctctatatataccacaggacaacctgcctggggttggtagcatccacg 324
Query: 125 gtgggctgggcacccctacatcaattagcaaccagtggcagatctttctgtctcatcatt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtgggctgggcacccctacatcaattagcaaccagtggcagatctttctgtctcatcatt 384
Query: 185 ttcccaggaagagtgtgggcttccctccctctgtgtttatctcataatttttaagggtct 244
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttcccaggaaaactgtgggcttccctccctctgtgtttatctcataatttttaagggtct 444
Query: 245 cagttcctttcatcattggccccagagactgcaatagcctcagtgggtacagaccaacct 304
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagttcctttcatcatcggccccagagactgcaatagcctcagtgggtacagaccaacct 504
Query: 305 tttaacctccacattataatacacttctgtaaaatatgcagctcagtcttggaatggaaa 364
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 505 tttaacctccacgttataatacgcttctgtaaaatatgcagctcagtcttggaatggaaa 564
Query: 365 tgataactgagtctcaaacagactaaaaaacagagaataaaccaggtagtggtggcacac 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgataactgagtctcaaacagactaaaaaacagagaataaaccaggtagtggtggcacac 624
Query: 425 gccttcaatcccagcacttggggttactgggatcagagaggcaggattttgacctctgaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gccttcaatcccagcacttggggttactgggatcagagaggcaggattttgacctctgaa 684
Query: 485 tttgaggtctatagacctggtctacaggctgagttccaggacagccagggttacatagag 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tttgaggtctatagacctggtctacaggctgagttccaggacagccagggttacatagag 744
Query: 545 aaaccctatcttcaaaaccaaaaccaaccagacagacagacagacagacagacagacaag 604
|||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 745 aaaccctatcttcaaaaccaaaaccaaccagacagacagacagacagaca--------ag 796
Query: 605 aaagaaaaaatgggaattagtgacacagacacacacctgtaactgaagta 654
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 aaagaaaaaatgggaattagtgacacagacacacacctgtaactgaagta 846
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space: 672336
Effective search space used: 672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no515_h08.g1 MSMg01no515_h08.g1 CHROMAT_FILE:
MSMg01no515_h08.g1 PHD_FILE: MSMg01no515_h08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:47 2005
(584 letters)
>mm_chr2_71858842_71859826
Length = 985
Score = 762 bits (394), Expect = 0.0
Identities = 486/554 (87%), Gaps = 60/554 (10%)
Strand = Plus / Minus
Query: 1 ctagttctgcccatcagggccagcaagccggatgcccacacctgctccagtgcacagact 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 554 ctagttctacccatcagggccagcaagccggatgcccacacctgctccagtgcactcact 495
Query: 61 ccaggcaaacaaagcaagggtcacctttgtcccacaacttcgcagaaatgaatggcatca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ccaggcaaacaaagcaagggtcacctttgtcccacaacttcgcagaaatgaatggcatca 435
Query: 121 gaattttgaaactccgtctcttgaccctaattcaa-aagactgccgcatgccctcccaag 179
||||||||||||||| ||||||||| |||||| || ||||||||||||||||||||||||
Sbjct: 434 gaattttgaaactccatctcttgacgctaatttaacaagactgccgcatgccctcccaag 375
Query: 180 cagaacgtaaagccttacaaggaattggacctcaagtctgccctatgctgattgctcctc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 cagaacgtaaagccttacaaggaattggacctcaagtctgccctatgctgattgctcctc 315
Query: 240 cattgggggaatctagtgcgtttctctacatcacagtagcacaaggcaaaaagcagtcac 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 cattgggggaatctagtgcgtttctctacatcacagtagcacaaggcaaaaagcagtcac 255
Query: 300 gtctccacgcaaaggt-------------------------------caa-------gtc 321
|||||||||||||||| ||| |||
Sbjct: 254 gtctccacgcaaaggtcacgtctccacgcaaaggtcaggtctccacgcaaaggtcacgtc 195
Query: 322 tccacgcaaaggtcaggtctccacgcaaaggtacgcg---------------------tg 360
||||||||||||||||||||||||||||||||||||| ||
Sbjct: 194 tccacgcaaaggtcaggtctccacgcaaaggtacgcggaggtctgcaccggctccccatg 135
Query: 361 attcagagggaagacttcttctaactcccacttctctcagcaccaatacaggcgttctaa 420
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 gttcagagggaaggcttcttctaactcccacttctctcagcaccaatacaggcgttctaa 75
Query: 421 ctagtgggtgaaaaatgtgagtgagtgggcagaaagtgtgtaagtaccaagagggcatga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 ctagtgggtgaaaaatgtgagtgagtgggcagaaagtgtgtaagtaccaagagggcatga 15
Query: 481 aaggtgtctagcta 494
||||||||||||||
Sbjct: 14 aaggtgtctagcta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 985
Length adjustment: 10
Effective length of query: 574
Effective length of database: 975
Effective search space: 559650
Effective search space used: 559650
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
