BAC Information

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BAC

Clone NameMSMg01-516D02
Chromosome2 (Build37)
Map Location 24,147,896 - 24,148,546
singlet/doubletsinglet
Overlap geneIl1f10
Upstream geneNxph2, LOC664822, 4921517N04Rik, LOC100039149, Sh3d2c-ps1, Hnmt, Tbpl2, Il1f8, LOC215253, Il1f9, Il1f6, LOC620156, Il1f5
Downstream geneIl1rn, Psd4, Pax8, LOC433410, LOC664938, Cacna1b, Ehmt1, Arrdc1, Zmynd19, Wdr85, Mrpl41, Pnpla7, Nelf, Entpd8, Noxa1, Nrarp, A830007P12Rik, A730008L03Rik, 4933433C11Rik, BC061039, Tubb2c, Slc34a3, Gm757, 2310002J15Rik, Rnf208, LOC100039232, Ndor1, C730025P13Rik, C430004E15Rik, Ssna1, Anapc2, 4930571C24Rik, BC004853, Grin1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-516D02.T7 (MSMg01no516_d02.b1)MSMg01-516D02.TJ (MSMg01no516_d02.g1)
ACCAG588249AG588250
length7582,166
length of high quality
(start - end)
652 (52 - 703)---
definitionCHROMAT_FILE: MSMg01no516_d02.b1 PHD_FILE: MSMg01no516_d02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:47:49 2005CHROMAT_FILE: MSMg01no516_d02.g1 PHD_FILE: MSMg01no516_d02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:47:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCACTTTTTACAGGAAGAAACTGCCCCTACCTCTTCTCCTT
ATCACTGTGACAATATTCTCATGTCTCTAGAGACACAATTGAAGGAAAGA
ATCAAGGCCTTGTGGCAGATGGACACTAAGCAACTTCTGGAAGAGAGCAC
CCCCTCACCCTCCCCTCCACTCCCCCACCCCCACCACCGGAAGATCACCT
GGACTATAATTGTCTGAATCAGGGTCTCCCAGCAGGAGCTGGCCATTCCG
TGTGTACAAAGCCTTTTGATGTGCATCCTTGATTCTGAAATAGGAGGGCA
AGGTTAATGGATCACGGCCCTCAGGGATCATTGTCCATTTCAGTCCCCAT
ACCACCTTACTGGACAACCACATGGAGCCTTTGGTGAATTGTTTCCAGAC
AGGAGAGGGACACTGTTCCAATAAGGGTAGAAATTGTTTCATCCCAAAGC
TTCTAGGCTCAGGATTATCAGAGGCTCCAGAAGTGACAATAGTGTCTTCT
CATGAGGTAATTGAGGATGTTTTCATGGCTGTCTGAGGAGTTGCTTTGAG
GCTCAGGTACCCTGGAGATACAATGAACCCTATCCATGATGTTTCTGAGC
TTGATTTATTTTATTTTTTAAAATAGTAACATTAATTAATGAAGGAACTG
AAGATGTAGTAACTGTGATTTGATTCGTAAAATTAAAAAATTCTTTTTGT
AGAAAATC
TTTCGCTCTCTAGCTAGTTGCTATGCGNGCGCGCGCGCGTGACGCGTTCG
TGATNTGTGATCACTNCGCTGATAGTAGATATATNTCGCAGGTAGAGAGA
GATANGACGNAGAAGAAGAAGTGAACAGATAGAGAGTAGAGAGATATAAT
ATTATCAGCAGTACACTATATNTATATANTATAATCACGTAGANCATACA
CACTACTCGCATCGGATGACGACTGCACATATACACACATGTCTTNTACA
TGCTACTATTGCGATGTGTGCTANGCTAGCACATGAGCAGTAGATNGCGC
TCTGACAGTGNCGTATCGACTCATGATACGCGCGCACGTCTGNGCAGACG
ACCGTATGCATNATTATGCTCACGTATACANGCTACGTCNATGAACGTAA
ACACGACGGNCACACCCCNAGCTANCATCCGCAGCGCCNACGCGAAACTA
GTTCAGTNTGCGCTCGCAGNGAGATAGCAGTGATAGCATTACTATNGNTA
GCTGACGATCATTGATCTGCAGCGTTACTCTCTTACGGCTGGTTGTATCG
TGACTACGATCTCGCGGCAGACTACTGATAGTCGTGTACTCAGTTATGGA
CAGATACTACTCACAGCTATAAGCANCGGCAGCACTGTGCACTAGTCNGC
ATCTGCAGATTGACGACGTAGTATGTAGTACGATCAGCGCGCGAGGTGCG
GAAGTGTGATATATACTCAGNTCGGTGTAGANGNAGACGCGCGGATCGGC
GACTATCANCAGTATATACAGAGTCTATATGCACGATCATGAGCACTCTC
ACCTTAGCGACGCGCTACGCGATCGTATAGTCNTAATATGTCGTNGTAAC
GNGACTCACGATATGTATTATACTATATCATGTNTANTGATANTAAGCGT
NANGACGTGACACGCACTCACGACAGATGAATAGATTGATATANCNANGC
AGCACNTNACTATATGACGCCACAGAGTCATGATGCTACTATACAGGGAC
ATGCGACTTAGACTATCCTAATGANGTTGAGGTATATAGCATTGATTACA
CCAGACACACTANGAGGCTGCGTAGATATTANTCATCGGTGCGATCGCTG
CGCCGNCGTAATACGACGTATGACAGTCGAGCAGATTGANGTNGTGTNGA
TAGACTGTATTTGACGCNCTGGTNGGNCTGGGTGACTGTATCGTACGGNA
GACGTCATGACTAACACNGACTAGAGTAGATACGACGACACCGGCAGCGA
TACATAAANTAAAGTACTAGATATATAGAGTAATTGGCAATCGCGACGAA
TGATCGANAGNCTCTACACTANCAGTGAAATCACAGANNCGNCCNCGACG
TGCTGTACGAACGTCAGCACTANCTCTACATNACTACAGACGTAGCTGGC
ACGCATGCTATATACCGCTGANTNCGCTACTGAACTGACTATAAGCATGA
CTATATGCGNCATCGCGAGTATATAGTATNGCCGTGTCATGCACGCAGCG
CATAGTGAGCATCTANATGAGGATATGACATGCGCGATGNTCGCTACGTG
CAANCATATGCAGNGTGTATTGCCGTCGTCGACGTCGTGCAACTNTGCTG
ACTGCTGCGTAGNGACGACGTNGANATTGTATATATATGATTCACTAAAT
CTANCGCACAGCNCTATGTCGTCGCGTGAGATGANATCGAGACTTGATCG
TGATCCCGAACGAAGAGATCAGTTGAGCAGACGACGTACGACAGAAACCA
AATATCGATGATGATATNATATANTAATNTGAAGACNANGACACTGACGG
CTCATCGGCTNAGATATGACACAGACGTCGACNGCTGAACGNACCGTCGA
GCACTGGTAGTATGAGTAGNGCGTGACGAGCTGATGCTTAGTTGAATCGT
CTGATCGAGCNCTGCGTCCGGCCGCTCGGCAGATGCATTAAGACGAAGNG
CCGATANCAGATAGGCGAGNACTANCATAACTGATGTGCTCGTCACGTGC
NGCGCACATGTATAGACATGNATNNCACGTANATATCACANCTACTGCCA
GCTCGAGAGTCGACGAGNATTAATCTGTACGACGACGACGTGTTGCATGA
TGANTCCTGTATGCACNGTGAGGANTNGTCGTGCGCANCNTGCGCTGCTT
CGTGNTGGTCGAGCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no516_d02.b1 MSMg01no516_d02.b1 CHROMAT_FILE:
MSMg01no516_d02.b1 PHD_FILE: MSMg01no516_d02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:49 2005
         (652 letters)



>mm_chr2_24147743_24148796
          Length = 1054

 Score = 1166 bits (603), Expect = 0.0
 Identities = 639/651 (98%), Gaps = 2/651 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactttttacaggaagaaactgcccctacctcttctccttatcactgtgacaat 63
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ggaattcattttttacaggaagaaactgcccctacctcttctccttatcactgtgacaat 745

                                                                       
Query: 64  attctcatgtctctagagacacaattgaaggaaagaatcaaggccttgtggcagatggac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 attctcatgtctctagagacacaattgaaggaaagaatcaaggccttgtggcagatggac 685

                                                                       
Query: 124 actaagcaacttctggaagagag-caccccctcaccctcccctccactcccccaccccca 182
           ||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||
Sbjct: 684 actaagcaacttctggaagagagccccccccacaccctcccctccactcccccaccccca 625

                                                                       
Query: 183 ccaccggaagatcacctggactataattgtctgaatcagggtctcccagcaggagctggc 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ccaccggaagatcacctggactataattgtctgaatcagggtctcccagcaggagctggc 565

                                                                       
Query: 243 cattccgtgtgtacaaagccttttgatgtgcatccttgattctgaaataggagggcaagg 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cattccgtgtgtacaaagccttttgatgtgcatccttgattctgaaataggagggcaagg 505

                                                                       
Query: 303 ttaatggatcacggccctcagggatcattgtccatttcagtccccataccaccttactgg 362
           |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 504 ttaatggatcactgccctcagggatcattgtccatttctgtccccataccaccttactgg 445

                                                                       
Query: 363 acaaccacatggagcctttggtgaattgtttccagacaggagagggacactgttccaata 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acaaccacatggagcctttggtgaattgtttccagacaggagagggacactgttccaata 385

                                                                       
Query: 423 agggtagaaattgtttcatcccaaagct-tctaggctcaggattatcagaggctccagaa 481
           ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 384 agggtagaaattgtttcatcccaaagctgcctaggctcaggattatcagaggctccagaa 325

                                                                       
Query: 482 gtgacaatagtgtcttctcatgaggtaattgaggatgttttcatggctgtctgaggagtt 541
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atgacaatagtgtcttctcatgaggtaattgaggatgttttcatggctgtctgaggagtt 265

                                                                       
Query: 542 gctttgaggctcaggtaccctggagatacaatgaaccctatccatgatgtttctgagctt 601
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gctttgaagctcaggtaccctggagatacaatgaaccctatccatgatgtttctgagctt 205

                                                              
Query: 602 gatttattttattttttaaaatagtaacattaattaatgaaggaactgaag 652
           ||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 204 gatttattttatttttttaaatagtaacactaattaatgaaggaactgaag 154


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1054
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1044
Effective search space:   670248
Effective search space used:   670248
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)