Query= MSMg01no516_g12.b1 MSMg01no516_g12.b1 CHROMAT_FILE:
MSMg01no516_g12.b1 PHD_FILE: MSMg01no516_g12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:07 2005
(222 letters)
>mm_chr2_43705114_43705736
Length = 623
Score = 402 bits (208), Expect = e-117
Identities = 214/216 (99%), Gaps = 1/216 (0%)
Strand = Plus / Plus
Query: 5 gaattcattcagcattcaactttaatttttaattatgaaccttgaaattatgcctcagct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattcagcattcaactttaatttttaattatgaaccttgaaattatgcctcagct 264
Query: 65 tttctgatgaagctcaggaacctttttatttggggaatttcatactcaaagctgtacgga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttctgatgaagctcaggaacctttttatttggggaatttcatactcaaagctgtacgga 324
Query: 125 tccttggcctatctgaagccccgtgatgatttagtaatagggtattttggggggggg-tt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 325 tccttggcctatctgaagccccgtgatgatttagtaatagggtattttggggggggggtt 384
Query: 184 gttttgttctattgttatgttttgtttttctctttc 219
|||| |||||||||||||||||||||||||||||||
Sbjct: 385 gtttcgttctattgttatgttttgtttttctctttc 420
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 222
Length of database: 623
Length adjustment: 9
Effective length of query: 213
Effective length of database: 614
Effective search space: 130782
Effective search space used: 130782
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no516_g12.g1 MSMg01no516_g12.g1 CHROMAT_FILE:
MSMg01no516_g12.g1 PHD_FILE: MSMg01no516_g12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:07 2005
(589 letters)
>mm_chr2_43849535_43850526
Length = 992
Score = 1081 bits (559), Expect = 0.0
Identities = 583/593 (98%), Gaps = 5/593 (0%)
Strand = Plus / Minus
Query: 1 tatgagaaggctgggtattatgtagaacgttaaaatgacatagttattcggaatatataa 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 792 tatgagaaggctgggtattatgtagaacgttaaaatgacatagttatttggaatatataa 733
Query: 61 tcaaaatattgagtataaacagagatgggtggtaatgacagctgttatagtgttgtgata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 tcaaaatattgagtataaacagagatgggtggtaatgacagctgttatagtgttgtgata 673
Query: 121 gtaaatgtccaagtgtctcctttgaggaaagcttaagtgaataggtaaaagttgatgaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 gtaaatgtccaagtgtctcctttgaggaaagcttaagtgaataggtaaaagttgatgaca 613
Query: 181 ggaagaagaaatttagacccagagaaacaaaaatgctttttgagaaaattaaaaagtagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ggaagaagaaatttagacccagagaaacaaaaatgctttttgagaaaattaaaaagtagt 553
Query: 241 atagccagagcgaaaaagaaaagaaaaggggggggggaggtggtgttacagggtgagaat 300
|||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 552 atagccagagtgaaaaagaaaa-aaaagggtggggggaggtggtgttacagggtgagaat 494
Query: 301 a----agagagtttggaaggactgtgtagtggtaagccatgaggatattctaaaaactca 356
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 493 aagatagagagtttggaaggactgtttagtggtaagccatgaggatattctaaaaactca 434
Query: 357 ttcaaagtagaattaaaatgacatacagctttgaataggtaagcagcttcatttcattca 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ttcaaagtagaattaaaatgacatacagctttgaataggtaagcagcttcatttcattca 374
Query: 417 catatttaaatggtcaatctggctgtttttgaagagtatatgcctagggactggaaaaga 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 catatttaaatggtcaatctggctgtttttgaagagtatatgcctagggactggaaaaga 314
Query: 477 agtgtgcaagctgagaaagactattgcagtaccacagaaggaaggcatggccgttcaggc 536
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 313 agtgtgcaagctgagaaagactattgcagtaccacagaaggaaggcatggccgttcagac 254
Query: 537 agtgctgcaaagttgagaaagacaaaaacagatccattcaagttactttgaca 589
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 agtgctgcaaagttgagaaagacaaaaacagatccattcaagttactttgaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 992
Length adjustment: 10
Effective length of query: 579
Effective length of database: 982
Effective search space: 568578
Effective search space used: 568578
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
