Query= MSMg01no516_n22.b1 MSMg01no516_n22.b1 CHROMAT_FILE:
MSMg01no516_n22.b1 PHD_FILE: MSMg01no516_n22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:46 2005
(639 letters)
>mm_chr2_32956491_32957529
Length = 1039
Score = 1212 bits (627), Expect = 0.0
Identities = 633/635 (99%)
Strand = Plus / Minus
Query: 5 gaattcctagaggtaggagtggggaatctgggtgaaggtgacaaatgcatcagaagtctt 64
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 839 gaattcctagaggtaggagtggggaatctgggtgaaggtgaaaaatgcatcagaagtctt 780
Query: 65 agcagtgagaactggttgactatgttgactaggaagccatgacacatttctgagaagtaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 agcagtgagaactggttgactatgttgactaggaagccatgacacatttctgagaagtaa 720
Query: 125 ggcatgctgggaatacaggggtgcaactttctggggttcttcactctcccaatctatgac 184
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 719 ggcatgctgggaatacaggggtgcaactttctgggattcttcactctcccaatctatgac 660
Query: 185 taatcagaccatgaagtaaaatttctttacagaggtgttatagcacaatctatgaggaga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 taatcagaccatgaagtaaaatttctttacagaggtgttatagcacaatctatgaggaga 600
Query: 245 caacaaaggaagttgtcagaaggatggctgcacttcctaaaaggatgtcagtcaggaggg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 caacaaaggaagttgtcagaaggatggctgcacttcctaaaaggatgtcagtcaggaggg 540
Query: 305 atgaagttgtacttggacgcccctcctgtttctagctcttgtttgtcaggtagtcttccc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 atgaagttgtacttggacgcccctcctgtttctagctcttgtttgtcaggtagtcttccc 480
Query: 365 cactggggtaatggtgcatgcgcatctaagaagtctgtaattcagactcacttctctccc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 cactggggtaatggtgcatgcgcatctaagaagtctgtaattcagactcacttctctccc 420
Query: 425 agggctcagtgacagtttacgtttggtcttttgaggaagattaccatgtatttgaaagtt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 agggctcagtgacagtttacgtttggtcttttgaggaagattaccatgtatttgaaagtt 360
Query: 485 tgtcaccaatgcatactacagagcaatggttttgtttttgtttttaatgcaagcattaaa 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tgtcaccaatgcatactacagagcaatggttttgtttttgtttttaatgcaagcattaaa 300
Query: 545 aacaaaaagctttcaaaagcattgaaagactacacatgttcctaatgaaaagccacttta 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 aacaaaaagctttcaaaagcattgaaagactacacatgttcctaatgaaaagccacttta 240
Query: 605 tcttaaaatgcagtgctgggtgataagcttttggt 639
|||||||||||||||||||||||||||||||||||
Sbjct: 239 tcttaaaatgcagtgctgggtgataagcttttggt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space: 647241
Effective search space used: 647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no516_n22.g1 MSMg01no516_n22.g1 CHROMAT_FILE:
MSMg01no516_n22.g1 PHD_FILE: MSMg01no516_n22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:46 2005
(514 letters)
>mm_chr2_32826369_32827283
Length = 915
Score = 886 bits (458), Expect = 0.0
Identities = 509/538 (94%), Gaps = 26/538 (4%)
Strand = Plus / Plus
Query: 1 ttccttgcggaagaccagaattcttttccagcccctaaatcagggcagcttacaaccgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 ttccttgcggaagaccagaattcttttccagcccctaaatcagggcagcttacaaccgcc 239
Query: 61 tgtactgctagaggagcaactgcttctggactccgtgggtatctataattcccctcc-ac 119
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 240 tgtaccgctagaggagcaactgcttctggactccgtgggtatctataattcccctccaac 299
Query: 120 ccccc-----------c-ctctct------cacacacacacacacacacacacacacaca 161
||||| | |||||| ||||||||||||||||||||||||||||||
Sbjct: 300 ccccctctctctctctctctctctcacacacacacacacacacacacacacacacacaca 359
Query: 162 cttaaatcct--aaaaaaaaaaaaaggtggagagcaattgggggatacactatatcaaca 219
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 cttaaatcctaaaaaaaaaaaaaaaggtggagagcaattgggggatacactatatcaaca 419
Query: 220 tctggtgtccacacacatgcacccacacatacaaatgtatgcattattccctccccc--- 276
|||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 420 tctggtgtccacacacatgcacccacacatacaaatgtatgcatta-tccc-cccccaca 477
Query: 277 cacaaaagtaaaaagcagaaaataaaaatggcagccaatggctgggggacacagcgtggt 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cacaaaagtaaaaagcagaaaataaaaatggcagccaatggctgggggacacagcgtggt 537
Query: 337 gccgggcgtgtttggctagttagcacacgctgggctctgagcccagttgccagtgatggg 396
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gccgggagtgtttggctagttagcacacgctgggctctgagcccagttgccagtgatggg 597
Query: 397 aagaaaaacacggcaggagaccaagcacatgggagtggcagtaagagaacgcctttcccg 456
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 aagaaaaacacagcaggagaccaagcacatgggagtggcagtaagagaacgcctttcccg 657
Query: 457 gctttgcggacagtcatctccctcacacctggactgagacaccgctacaatcctgacc 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 gctttgcggacagtcatctccctcacacctggactgagacaccgctacaatcctgacc 715
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 915
Length adjustment: 10
Effective length of query: 504
Effective length of database: 905
Effective search space: 456120
Effective search space used: 456120
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
