BAC Information

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BAC

Clone NameMSMg01-517D23
Chromosome2 (Build37)
Map Location 118,094,283 - 118,291,783
singlet/doubletdoublet
Overlap geneGpr176, 1700054M17Rik, Eif2ak4
Upstream gene2610510H03Rik, Rasgrp1, Thbs1, Fsip1
Downstream geneSrp14, LOC668859, Bmf, LOC640461, Bub1b, Pak6, Gm1337, Plcb2, LOC100043272, A430105I19Rik, Disp2, D2Ertd750e, Ivd, Bahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5, Rad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1, Rhov, Vps18, LOC100043609, Dll4, Chac1, Inoc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-517D23.T7 (MSMg01no517_d23.b1)MSMg01-517D23.TJ (MSMg01no517_d23.g1)
ACCAG589045AG589046
length800800
length of high quality
(start - end)		555 (31 - 585)567 (64 - 630)
definitionCHROMAT_FILE: MSMg01no517_d23.b1 PHD_FILE: MSMg01no517_d23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:15 2005CHROMAT_FILE: MSMg01no517_d23.g1 PHD_FILE: MSMg01no517_d23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,291,377 - 118,291,783)(118,094,283 - 118,094,849)
sequence
GGCGCTATACGACTCACTATATTCAGAGGATCCGCGGAATTCTCTTGTGC
TTTCACTACTTTCATGATTGTGTTGAAGGATGGCAAACAAGTAATGCAGC
CGTGACAGGAAGAGGTTTTCAATGGCTTCAAGCCTTAACAAAATGTGCCA
AGTTCTGTAACACACACACACACACACACACACACACACACACACACACA
CACACACACACACACACACACACACACACACAGCATTTTAGGAAAGCAAA
GGAATAAAAAAACATCAGCTAGAACAAAGCAGAATTAAGCTGTGTATTTG
GTTCTTGCCTATAATCCTAGCACCCAGGAGGAGGCTAAGGCAGGAGGATG
GGCTACAGTGAGATCCTGTCTCACAAAACAGAAACTGAACACCCGGAAAC
TGAACACCCGAACACTTCTCTAAGAACATATGAAGCAAGCAAATTGATGC
CTTTTTAGTTACATGATTAAAAACTTGACAACAGTTTTTATATGAACACA
CAGAGCTGCAGAAAGCTCATGGTGGGAGAGTTGGCCTGTGGGTTCCAGTC
ATTGCAGAGCCCTGGGGTGCCATTAGTGTAGCTAATGTACAAGCATCCCC
CATGCCTGATAACACAGACATTGGGTATCTAAAGCTCCCAACTCCAATTG
TGAAGGGCAGGCANGTGTCCAGCGTGACACTTTCCTCACCTCACAGCTAG
AGCAGATAGCANGTCTGCACAGGAGGAGCGCTGATGACTTACAGATCCAC
AGACACACAAGCTCAGAGTGCCCTCAGTGTGGCAAGCTGGGCACAGCATG


XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTGATGTTAATTCTGCTTCCTCAAAAGGGGTTGCCCCC
GGAAAAGCAGTCAGTCACGAACTCAAGTGATCTCATGTGAACCTTCTCCC
CACTTACTGGCCAATAAGAGGTAGAGTCGTGATCGGGCAGTGAAGGAGAA
AGGTGGGATGGGAGGTCTTTGAAAGTGGGGGCAGTAGAGAGAGAAAGACT
AGAAGGGAAGGAGAGAGGACAGAAGAGGAGGAGGAGGAAGCAATGGTGGA
GCAGAACCACATGGCCAGGAGAAACTGCAAGTAGCAAAGGGTCTCATAGC
TGGGAATAAGTTAGCATAGTGCTAATATTGCCCAACCTAGGCTTAGCACT
TATCACTTGTAGGTTTGATGGTTTTTTTACAGGATTATTGGGGTTGGAAA
TTACTGCAACAGTGCCATGTTGAAGTTAAACACGCCATTAAAATTGCTGT
TGAGGTGAACTACCGGGTTTGAGTTTCAAACGTTAAGCTGCATCCGCAGC
TCTGATGGTGTAACTTTTGAAAGTTGCCAGAATTTTTTCTCATGAATCTA
AATCTCATCACTCTGCTCCACATTTCAGGGAATTTTATACCCGGGAGACA
GCCTCAGACTCCTGCGTTTATTTGGCTCTCATTCTCTGATCATTTTGTGT
GAGAGCCCTTGCCAGCAGGTTCTGTGCAAGTGAACCTTACAACATGTCTC
TGATCAAGCCCAGAGATCCCAAGAAGGGCGGCACTTGGATGATCCATAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no517_d23.b1 MSMg01no517_d23.b1 CHROMAT_FILE:
MSMg01no517_d23.b1 PHD_FILE: MSMg01no517_d23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:15 2005
         (555 letters)



>mm_chr2_118290829_118291783
          Length = 955

 Score =  787 bits (407), Expect = 0.0
 Identities = 407/407 (100%)
 Strand = Plus / Minus

                                                                       
Query: 149 cacacacacacacacacacacacacacacacacacacacacacacacacacacagcattt 208
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 955 cacacacacacacacacacacacacacacacacacacacacacacacacacacagcattt 896

                                                                       
Query: 209 taggaaagcaaaggaataaaaaaacatcagctagaacaaagcagaattaagctgtgtatt 268
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 taggaaagcaaaggaataaaaaaacatcagctagaacaaagcagaattaagctgtgtatt 836

                                                                       
Query: 269 tggttcttgcctataatcctagcacccaggaggaggctaaggcaggaggatgggctacag 328
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 tggttcttgcctataatcctagcacccaggaggaggctaaggcaggaggatgggctacag 776

                                                                       
Query: 329 tgagatcctgtctcacaaaacagaaactgaacacccggaaactgaacacccgaacacttc 388
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 tgagatcctgtctcacaaaacagaaactgaacacccggaaactgaacacccgaacacttc 716

                                                                       
Query: 389 tctaagaacatatgaagcaagcaaattgatgcctttttagttacatgattaaaaacttga 448
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 tctaagaacatatgaagcaagcaaattgatgcctttttagttacatgattaaaaacttga 656

                                                                       
Query: 449 caacagtttttatatgaacacacagagctgcagaaagctcatggtgggagagttggcctg 508
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 caacagtttttatatgaacacacagagctgcagaaagctcatggtgggagagttggcctg 596

                                                          
Query: 509 tgggttccagtcattgcagagccctggggtgccattagtgtagctaa 555
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 tgggttccagtcattgcagagccctggggtgccattagtgtagctaa 549


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 117
Number of extensions: 36
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space:   515025
Effective search space used:   515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no517_d23.g1 MSMg01no517_d23.g1 CHROMAT_FILE:
MSMg01no517_d23.g1 PHD_FILE: MSMg01no517_d23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:16 2005
         (567 letters)



>mm_chr2_118094083_118095049
          Length = 967

 Score = 1089 bits (563), Expect = 0.0
 Identities = 566/567 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgatgttaattctgcttcctcaaaaggggttgcccccggaaaagcagtcagtcacgaact 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgatgttaattctgcgtcctcaaaaggggttgcccccggaaaagcagtcagtcacgaact 260

                                                                       
Query: 61  caagtgatctcatgtgaaccttctccccacttactggccaataagaggtagagtcgtgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caagtgatctcatgtgaaccttctccccacttactggccaataagaggtagagtcgtgat 320

                                                                       
Query: 121 cgggcagtgaaggagaaaggtgggatgggaggtctttgaaagtgggggcagtagagagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgggcagtgaaggagaaaggtgggatgggaggtctttgaaagtgggggcagtagagagag 380

                                                                       
Query: 181 aaagactagaagggaaggagagaggacagaagaggaggaggaggaagcaatggtggagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagactagaagggaaggagagaggacagaagaggaggaggaggaagcaatggtggagca 440

                                                                       
Query: 241 gaaccacatggccaggagaaactgcaagtagcaaagggtctcatagctgggaataagtta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaccacatggccaggagaaactgcaagtagcaaagggtctcatagctgggaataagtta 500

                                                                       
Query: 301 gcatagtgctaatattgcccaacctaggcttagcacttatcacttgtaggtttgatggtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcatagtgctaatattgcccaacctaggcttagcacttatcacttgtaggtttgatggtt 560

                                                                       
Query: 361 tttttacaggattattggggttggaaattactgcaacagtgccatgttgaagttaaacac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttttacaggattattggggttggaaattactgcaacagtgccatgttgaagttaaacac 620

                                                                       
Query: 421 gccattaaaattgctgttgaggtgaactaccgggtttgagtttcaaacgttaagctgcat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gccattaaaattgctgttgaggtgaactaccgggtttgagtttcaaacgttaagctgcat 680

                                                                       
Query: 481 ccgcagctctgatggtgtaacttttgaaagttgccagaattttttctcatgaatctaaat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccgcagctctgatggtgtaacttttgaaagttgccagaattttttctcatgaatctaaat 740

                                      
Query: 541 ctcatcactctgctccacatttcaggg 567
           |||||||||||||||||||||||||||
Sbjct: 741 ctcatcactctgctccacatttcaggg 767


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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