BAC Information

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BAC

Clone NameMSMg01-518F03
Chromosome2 (Build37)
Map Location 71,900,727 - 72,062,078
singlet/doubletdoublet
Overlap geneRapgef4, LOC100040270
Upstream gene4833418A01Rik, Cybrd1, Dync1i2, Slc25a12, LOC667528, Hat1, LOC100040177, Metapl1, LOC100040207, Dlx1, Dlx1as, Dlx2, Gm1631, Itga6, Pdk1
Downstream geneB230120H23Rik, Cdca7, LOC383712, LOC635960, LOC100039928, 6430710C18Rik, Sp3, Hspe1-ps5, Gtpbp9, LOC620110
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-518F03.T7 (MSMg01no518_f03.b1)MSMg01-518F03.TJ (MSMg01no518_f03.g1)
ACCAG589857AG589858
length766775
length of high quality
(start - end)
699 (49 - 747)576 (78 - 653)
definitionCHROMAT_FILE: MSMg01no518_f03.b1 PHD_FILE: MSMg01no518_f03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:41 2005CHROMAT_FILE: MSMg01no518_f03.g1 PHD_FILE: MSMg01no518_f03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,061,405 - 72,062,078)(71,900,727 - 71,901,296)
sequence
NACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCAGAAATGTCTAATTTATAAATTTTATTACAGCGTATTATAG
TATTTTCATATCAGTTATTGTAGTCCACTTCCTAGTGTGCTGAACTGACA
AACTCTATTCTGAGTAGATATGTGTAGGAAAAAAGAGCAATATACAGAAC
TTGGTTATATTAGCAGTGCAGGTACTACCTGGGGTCTTGGAATATATCCG
TGAATATTGGGATACTACTTAATCCAGGGTCAAAGGCCAAAGCCTACGCT
GCAGAGAAGAAAGTCAGCTGAGCCGGAAGCAGTGCTGACCAAGAAAATGG
TGTCCATTCAGAACTGGCCCCTGGCTGCCCTGGCAAGTCCTCATTAAATC
ACCCAGCCTCTCAGCAGCCAACCCCACCCACCATTCTCCCTTGGGCTTTT
ACTCCTAAGAAAGTGAGTAACTGAAGACAGACCCGCATGCACAAAAGTGT
TTGCTGTACAGTTATCCTAGCAAGGAGAAAGCAGACAAGTGTGGGCACAG
ATAAATGCTTTTGTGGACAGCTGCTGATGGAGTGTCGGAACCTTTCATTA
CAAAGAACACACTGACATGGGGAAAAAAATCTTTACAGAGCGAAGTAGAA
AAAAAAAAGCAGCCTGCAAAATGCTGGGTACTCATGCGATTACAAGTCTC
TCAAACATGCAAAGAACACAAGAGCAGACCATAACGCACCATGGTGGCAC
CACTCATGGAGCTGGA
NTTCTATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCACCAAGGAGTGATCAGGGAGGA
GTGATCAGGGAAGAGTGATCAGGGAGGAGTGATCAGGGAGGAATTATCGG
CCTCGGGCCAGGTCTGATTCAAGAACACTGTGGTCATTGGATCTTAAATT
TACACGGTGTGTCTCTGTGAATAACAACGAATTAACAGTAACAGATGGAT
TTGATCTGCTACCATCTGACTGCTGGAGATATTCTTATTGTTTAGACATA
TCAACTCTTTAATAGTAAGTTATTATCATCTTAGTCTGGAGAATAGGATT
GAAATGTTATCATTTCAGGTATGAGAGCATGGGGAATGAAAATCTCTCAG
TTAGCTTAAGAAACAGTCAAGATAAGATTCAAATGTTTGCTTTCAGCCTA
CTGGAAATGCAAGGACTTACTTCATTCACTGGCAGACAGGTCACAACAGG
CACTTTTAATTCTGGGATTTATGACCTAGAGGGTGGGGCTGAGTTCAGGG
CCCAGATGTTTGACCTTTGACATCACTCTCTGTGTACACATTCTGCTACC
CCCTCCCCCAAAAGGTCCTGGAGCCATTATTCTAATCTGTTGCTGCTGTC
CTCAGATCAGGAAACGTTTTCTGCAGAATCCAAAGGCTATAGAGTGGATT
AAGTAGCTGGAAGAATACAGAAATCACTGAAGTTTAGAAATTCATAGAGA
ATCTGTGCTGAGAGCAATGTAGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no518_f03.b1 MSMg01no518_f03.b1 CHROMAT_FILE:
MSMg01no518_f03.b1 PHD_FILE: MSMg01no518_f03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:41 2005
         (699 letters)



>mm_chr2_72060980_72062078
          Length = 1099

 Score = 1251 bits (647), Expect = 0.0
 Identities = 668/675 (98%), Gaps = 1/675 (0%)
 Strand = Plus / Minus

                                                                        
Query: 25   ttataaattttattacagcgtattatagtattttcatatcagttattgtagtccacttcc 84
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1099 ttataaattttattacagtgtattatagtattttcatatcagttattgtagtccacttcc 1040

                                                                        
Query: 85   tagtgtgctgaactgacaaactctattctgagtagatatgtgtaggaaaaaagagcaata 144
            ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 1039 tagtgtgctgaactgacaaactctattctgagtaggtatgtgtagg-aaaaagagcaata 981

                                                                        
Query: 145  tacagaacttggttatattagcagtgcaggtactacctggggtcttggaatatatccgtg 204
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 980  tacagaacttggttatattagcagtgcaggtactacctggggtcttggaatatatccgtg 921

                                                                        
Query: 205  aatattgggatactacttaatccagggtcaaaggccaaagcctacgctgcagagaagaaa 264
            |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 920  aatattgggatactacttaacccagggtcaaaggccaaagcctatgctgcagagaagaaa 861

                                                                        
Query: 265  gtcagctgagccggaagcagtgctgaccaagaaaatggtgtccattcagaactggcccct 324
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860  gtcagctgagccggaagcagtgctgaccaagaaaatggtgtccattcagaactggcccct 801

                                                                        
Query: 325  ggctgccctggcaagtcctcattaaatcacccagcctctcagcagccaaccccacccacc 384
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800  ggctgccctggcaagtcctcattaaatcacccagcctctcagcagccaaccccacccacc 741

                                                                        
Query: 385  attctcccttgggcttttactcctaagaaagtgagtaactgaagacagacccgcatgcac 444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740  attctcccttgggcttttactcctaagaaagtgagtaactgaagacagacccgcatgcac 681

                                                                        
Query: 445  aaaagtgtttgctgtacagttatcctagcaaggagaaagcagacaagtgtgggcacagat 504
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 680  aaaagtgtttgctgtacagttatcctagcaaggagaaagcagacacgtgtgggcacagat 621

                                                                        
Query: 505  aaatgcttttgtggacagctgctgatggagtgtcggaacctttcattacaaagaacacac 564
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 620  aaatgcttttgtggacagctgctgatggagtgtcggaacctttcattacaaagaactcac 561

                                                                        
Query: 565  tgacatggggaaaaaaatctttacagagcgaagtagaaaaaaaaaagcagcctgcaaaat 624
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560  tgacatggggaaaaaaatctttacagagcgaagtagaaaaaaaaaagcagcctgcaaaat 501

                                                                        
Query: 625  gctgggtactcatgcgattacaagtctctcaaacatgcaaagaacacaagagcagaccat 684
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500  gctgggtactcatgcgattacaagtctctcaaacatgcaaagaacacaagagcagaccat 441

                           
Query: 685  aacgcaccatggtgg 699
            |||||||||||||||
Sbjct: 440  aacgcaccatggtgg 426


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 699
Length of database: 1099
Length adjustment: 10
Effective length of query: 689
Effective length of database: 1089
Effective search space:   750321
Effective search space used:   750321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no518_f03.g1 MSMg01no518_f03.g1 CHROMAT_FILE:
MSMg01no518_f03.g1 PHD_FILE: MSMg01no518_f03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:41 2005
         (576 letters)



>mm_chr2_71900522_71901496
          Length = 975

 Score =  990 bits (512), Expect = 0.0
 Identities = 557/572 (97%), Gaps = 3/572 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   aggagtgatcagggaggagtgatcagggaagagtgatcagggaggagtgatcagggagga 65
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 206 aggagtgatcagggaggagtgatcagggaggagtgatcagggaggagtgatcagggagga 265

                                                                       
Query: 66  attatcggcctcgggccaggtctgattcaagaacactgtggtcattggatcttaaattta 125
            | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gtgatcagcctcgggccaggtctgattcaagaacactgtggtcattggatcttaaattta 325

                                                                       
Query: 126 cacggtgtgtctctgtgaataacaacgaattaacagtaacagatggatttgatctgctac 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cacggtgtgtctctgtgaataacaacgaattaacagtaacagatggatttgatctgctac 385

                                                                       
Query: 186 catctgactgctggagatattcttattgtttagacatatcaactctttaatagtaagtta 245
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 catctgaccgctggagatattcttattgtttagacatatcaactctttaatagtaagtta 445

                                                                       
Query: 246 ttatcatcttagtctggagaataggattgaaatgttatcatttcaggtatgagagcatgg 305
           |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 446 ttatcatcttagtctggagaataggattgaaatgttatcatttcaggtgtgggagcatgg 505

                                                                       
Query: 306 ggaatgaaaatctctcagttagcttaagaaacagtcaagataagattcaaatgtttgctt 365
           |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 506 ggaatgaacatctctcagttagcttaagaaacagtcgagataagattcaaatgtttgctt 565

                                                                       
Query: 366 tcagcctactggaaatgcaaggacttacttcattcactggcagacaggtcacaacaggca 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tcagcctactggaaatgcaaggacttacttcattcactggcagacaggtcacaacaggca 625

                                                                       
Query: 426 cttttaattctgggatttatgacctagagggtggggctgagttcagggcccagatgtttg 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 cttttaattctgggatttatgacctagagggtggggctgagttcagggcccagatgtttg 685

                                                                       
Query: 486 acctttgacatcactctctgtgtacacattctgctac-cccctcccccaaaaggtcctgg 544
           |||||||||||| |||| ||||||||||||||||| | ||||||||| ||||| ||||||
Sbjct: 686 acctttgacatcgctctatgtgtacacattctgct-ctcccctccccgaaaag-tcctgg 743

                                           
Query: 545 agccattattctaatctgttgctgctgtcctc 576
           ||||||||||||||||||||||||||||||||
Sbjct: 744 agccattattctaatctgttgctgctgtcctc 775


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 975
Length adjustment: 10
Effective length of query: 566
Effective length of database: 965
Effective search space:   546190
Effective search space used:   546190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)