Query= MSMg01no518_f03.b1 MSMg01no518_f03.b1 CHROMAT_FILE:
MSMg01no518_f03.b1 PHD_FILE: MSMg01no518_f03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:41 2005
(699 letters)
>mm_chr2_72060980_72062078
Length = 1099
Score = 1251 bits (647), Expect = 0.0
Identities = 668/675 (98%), Gaps = 1/675 (0%)
Strand = Plus / Minus
Query: 25 ttataaattttattacagcgtattatagtattttcatatcagttattgtagtccacttcc 84
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1099 ttataaattttattacagtgtattatagtattttcatatcagttattgtagtccacttcc 1040
Query: 85 tagtgtgctgaactgacaaactctattctgagtagatatgtgtaggaaaaaagagcaata 144
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 1039 tagtgtgctgaactgacaaactctattctgagtaggtatgtgtagg-aaaaagagcaata 981
Query: 145 tacagaacttggttatattagcagtgcaggtactacctggggtcttggaatatatccgtg 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 980 tacagaacttggttatattagcagtgcaggtactacctggggtcttggaatatatccgtg 921
Query: 205 aatattgggatactacttaatccagggtcaaaggccaaagcctacgctgcagagaagaaa 264
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 920 aatattgggatactacttaacccagggtcaaaggccaaagcctatgctgcagagaagaaa 861
Query: 265 gtcagctgagccggaagcagtgctgaccaagaaaatggtgtccattcagaactggcccct 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 gtcagctgagccggaagcagtgctgaccaagaaaatggtgtccattcagaactggcccct 801
Query: 325 ggctgccctggcaagtcctcattaaatcacccagcctctcagcagccaaccccacccacc 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ggctgccctggcaagtcctcattaaatcacccagcctctcagcagccaaccccacccacc 741
Query: 385 attctcccttgggcttttactcctaagaaagtgagtaactgaagacagacccgcatgcac 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 attctcccttgggcttttactcctaagaaagtgagtaactgaagacagacccgcatgcac 681
Query: 445 aaaagtgtttgctgtacagttatcctagcaaggagaaagcagacaagtgtgggcacagat 504
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 680 aaaagtgtttgctgtacagttatcctagcaaggagaaagcagacacgtgtgggcacagat 621
Query: 505 aaatgcttttgtggacagctgctgatggagtgtcggaacctttcattacaaagaacacac 564
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 620 aaatgcttttgtggacagctgctgatggagtgtcggaacctttcattacaaagaactcac 561
Query: 565 tgacatggggaaaaaaatctttacagagcgaagtagaaaaaaaaaagcagcctgcaaaat 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgacatggggaaaaaaatctttacagagcgaagtagaaaaaaaaaagcagcctgcaaaat 501
Query: 625 gctgggtactcatgcgattacaagtctctcaaacatgcaaagaacacaagagcagaccat 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gctgggtactcatgcgattacaagtctctcaaacatgcaaagaacacaagagcagaccat 441
Query: 685 aacgcaccatggtgg 699
|||||||||||||||
Sbjct: 440 aacgcaccatggtgg 426
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 699
Length of database: 1099
Length adjustment: 10
Effective length of query: 689
Effective length of database: 1089
Effective search space: 750321
Effective search space used: 750321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no518_f03.g1 MSMg01no518_f03.g1 CHROMAT_FILE:
MSMg01no518_f03.g1 PHD_FILE: MSMg01no518_f03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:41 2005
(576 letters)
>mm_chr2_71900522_71901496
Length = 975
Score = 990 bits (512), Expect = 0.0
Identities = 557/572 (97%), Gaps = 3/572 (0%)
Strand = Plus / Plus
Query: 6 aggagtgatcagggaggagtgatcagggaagagtgatcagggaggagtgatcagggagga 65
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 206 aggagtgatcagggaggagtgatcagggaggagtgatcagggaggagtgatcagggagga 265
Query: 66 attatcggcctcgggccaggtctgattcaagaacactgtggtcattggatcttaaattta 125
| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gtgatcagcctcgggccaggtctgattcaagaacactgtggtcattggatcttaaattta 325
Query: 126 cacggtgtgtctctgtgaataacaacgaattaacagtaacagatggatttgatctgctac 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cacggtgtgtctctgtgaataacaacgaattaacagtaacagatggatttgatctgctac 385
Query: 186 catctgactgctggagatattcttattgtttagacatatcaactctttaatagtaagtta 245
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 catctgaccgctggagatattcttattgtttagacatatcaactctttaatagtaagtta 445
Query: 246 ttatcatcttagtctggagaataggattgaaatgttatcatttcaggtatgagagcatgg 305
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 446 ttatcatcttagtctggagaataggattgaaatgttatcatttcaggtgtgggagcatgg 505
Query: 306 ggaatgaaaatctctcagttagcttaagaaacagtcaagataagattcaaatgtttgctt 365
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 506 ggaatgaacatctctcagttagcttaagaaacagtcgagataagattcaaatgtttgctt 565
Query: 366 tcagcctactggaaatgcaaggacttacttcattcactggcagacaggtcacaacaggca 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tcagcctactggaaatgcaaggacttacttcattcactggcagacaggtcacaacaggca 625
Query: 426 cttttaattctgggatttatgacctagagggtggggctgagttcagggcccagatgtttg 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 cttttaattctgggatttatgacctagagggtggggctgagttcagggcccagatgtttg 685
Query: 486 acctttgacatcactctctgtgtacacattctgctac-cccctcccccaaaaggtcctgg 544
|||||||||||| |||| ||||||||||||||||| | ||||||||| ||||| ||||||
Sbjct: 686 acctttgacatcgctctatgtgtacacattctgct-ctcccctccccgaaaag-tcctgg 743
Query: 545 agccattattctaatctgttgctgctgtcctc 576
||||||||||||||||||||||||||||||||
Sbjct: 744 agccattattctaatctgttgctgctgtcctc 775
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 975
Length adjustment: 10
Effective length of query: 566
Effective length of database: 965
Effective search space: 546190
Effective search space used: 546190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|