Query= MSMg01no518_p08.b1 MSMg01no518_p08.b1 CHROMAT_FILE:
MSMg01no518_p08.b1 PHD_FILE: MSMg01no518_p08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:32 2005
(695 letters)
>mm_chr2_4894950_4896044
Length = 1095
Score = 1232 bits (637), Expect = 0.0
Identities = 677/693 (97%), Gaps = 6/693 (0%)
Strand = Plus / Plus
Query: 5 gaattcttaaaatgtctctgctctaaggctctttttcagacaatctctttaatctgagat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttaaaatgtctctgctctaaggctctttttcagacaatctctttaatctgagat 264
Query: 65 gactcctgatgtgtttcttatgcaggtaactaagtaccccttggtcagctctgagaagtc 124
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 265 gactcctgatgtgtttcttatgcaggtaactaagtactccttggtcagttctgagaagtc 324
Query: 125 agcacctctagttaaaggcaggccagtgagagtccagggagagcccagaaaaagccagtg 184
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 325 agcacctctagttaaaggcaggccagtgagagtccagggagagcccagaaacagccagtg 384
Query: 185 ttggctgtgccttcctccactggaaaacacttgtccatttactctgctcttacatttttg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 385 ttggctgtgccttcctccactggaaaacacttgtccatttactctgctcttacgtttttg 444
Query: 245 ccagttacatttatttcccagtcaagcttatggaagatattaatataaagtctcatgaga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccagttacatttatttcccagtcaagcttatggaagatattaatataaagtctcatgaga 504
Query: 305 agggagcttcaggtgagtgcgcttctgttccagagctaatgcttatgggttggtttgtct 364
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 505 agggagcttcaggtgagtgcgcttctgttccagagctaatgcttatgggtt----tgtct 560
Query: 365 ttcttccaccctttacccccaaccccctttcatcctttcaacccctaacactagatagga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcttccaccctttacccccaaccccctttcatcctttcaacccctaacactagatagga 620
Query: 425 gagaaaaaaggagagaaggatgagagggaaggaaagagaaccctgaatctaatttcgttt 484
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct: 621 gagaaaaaaggagagaagggtgagagggaaggaaagagaaccctgaatctaatttctttt 680
Query: 485 ttcttctttgagcatgactaacaaaccacaaagaaccctcttgactgaccaatagcaacc 544
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 681 ttcttctttgagcatgactaacaaaccacaaagaaccctcttgaatgaccaatagcaacc 740
Query: 545 cacccacatctcagggctctagcat--atacaccctctgaaaagttcccagattccaaat 602
||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 741 cacccacatctcagggctctagcatttatacaccctctgaaaagtccccagattccaaat 800
Query: 603 gtcacacaatcacagaaactatctacagctggcaaacccatgcctctgctggagcacgag 662
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 801 gtcacacaatcacagaaactatctacagctggcaaatccatgcctctgctggagcacgag 860
Query: 663 gcaaatcatagtcagctgcagcagtcgctcaga 695
||||||||||||||||||| |||||||||||||
Sbjct: 861 gcaaatcatagtcagctgcggcagtcgctcaga 893
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1095
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1085
Effective search space: 743225
Effective search space used: 743225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no518_p08.g1 MSMg01no518_p08.g1 CHROMAT_FILE:
MSMg01no518_p08.g1 PHD_FILE: MSMg01no518_p08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:32 2005
(656 letters)
>mm_chr2_5012898_5013953
Length = 1056
Score = 1073 bits (555), Expect = 0.0
Identities = 561/563 (99%)
Strand = Plus / Minus
Query: 94 cttattagccctcctgtgtttcagttgtctattaccacaggataaacacacacacacatt 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1056 cttattagccctcctgtgtttcagttgtctattaccacaggataaacacacacacacatt 997
Query: 154 cagtggcttttttgagccagggtcttatgtagcccagactggccttgaactctatctgca 213
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 996 cagtgacttttttgagccagggtcttatgtagcccagactggccttgaactctatctgca 937
Query: 214 gctcaggggtgaacatgaactcctgatcttctgcctctacctccccacaccaggattaca 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936 gctcaggggtgaacatgaactcctgatcttctgcctctacctccccacaccaggattaca 877
Query: 274 ggcatgtgtacattacctggattacaggcatgtgtacattacctggtctacacagtgcca 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 ggcatgtgtacattacctggattacaggcatgtgtacattacctggtctacacagtgcca 817
Query: 334 gtctacacagtacctggtctaaacagtgccaggcctcatgctcacaaggcaagcactcta 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 gtctacacagtacctggtctaaacagtgccaggcctcatgctcacaaggcaagcactcta 757
Query: 394 cccaccgacctcctccacagcactgatccatcgcttcctatgagtctatgggttaatggg 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 cccaccgacctcctccacagcactgatccatcgcttcctatgagtctatgggttaatggg 697
Query: 454 ctcagctcaccagttctcctggatccgggtcacacatgctgctgacttctgctggagctc 513
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 696 ctcagctcaccagttctcctggatccgggtcatacatgctgctgacttctgctggagctc 637
Query: 514 agctgggcagaacacccatggagacatcactcagaagacaacagctggtgctagtctttg 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 agctgggcagaacacccatggagacatcactcagaagacaacagctggtgctagtctttg 577
Query: 574 cttgggcctctggttctccccatcatgaccttcctcctccgcaaactaaagaggggttct 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 cttgggcctctggttctccccatcatgaccttcctcctccgcaaactaaagaggggttct 517
Query: 634 caggatgtggcagctgggctctg 656
|||||||||||||||||||||||
Sbjct: 516 caggatgtggcagctgggctctg 494
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space: 675716
Effective search space used: 675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
