Query= MSMg01no519_d01.b1 MSMg01no519_d01.b1 CHROMAT_FILE:
MSMg01no519_d01.b1 PHD_FILE: MSMg01no519_d01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:50 2005
(683 letters)
>mm_chr2_78185207_78186289
Length = 1083
Score = 1212 bits (627), Expect = 0.0
Identities = 661/679 (97%), Gaps = 11/679 (1%)
Strand = Plus / Plus
Query: 5 gaattccagtgtttctgacacaatgcatccatggaatgaaaacgttccttcttacacctc 64
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagtggttctgacacaatgcatccatggaatgaaaacgttccttcttacacctc 264
Query: 65 ctaaatatcattttagtagagataatatacttaggaaatttcctcaagtattatttggta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctaaatatcattttagtagagataatatacttaggaaatttcctcaagtattatttggta 324
Query: 125 tttttcttttactcctgacttgtcacataaaacatgtccttccctttgtgaatgtatatt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttttcttttactcctgacttgtcacataaaacatgtccttccctttgtgaatgtatatt 384
Query: 185 ttccctgaacgccagttctctgaaaagctgcattctgcatactagtccaatctctagtat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttccctgaacgccagttctctgaaaagctgcattctgcatactagtccaatctctagtat 444
Query: 245 gatacaagcttagaaagcaatggacacggttccagttgggactccaagtctccatactca 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 445 gatacaagcttagaaagcaatggacacggttccagttgggactccaagtctccacactca 504
Query: 305 ggattgaaatacatactctacatcatttctttgccttcagttctaatactaatctgctga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggattgaaatacatactctacatcatttctttgccttcagttctaatactaatctgctga 564
Query: 365 catggcaacatgcctgctcccaggtgacaggagagacacctggagcacaggtgcctggca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 catggcaacatgcctgctcccaggtgacaggagagacacctggagcacaggtgcctggca 624
Query: 425 atgatgggctcagagaaatccttgacgaaacattgttcctgacatttcctctgcaggcca 484
|||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 625 atgatgggctcagagaaatccttg-----------ttcctgacatttcttctgcaggcca 673
Query: 485 tctctcctgggtacatgctaggcagtgtgctctcccttcctgtctgaggtcatgactgag 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 tctctcctgggtacatgctaggcagtgtgctctcccttcctgtctgaggtcatgactgag 733
Query: 545 gctatatgtcttcagaaatttctgctcatcattaaaagcaaaattctcagaacaaggtga 604
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct: 734 gctatatgtcttcagaaatttctgcttatcattaaaagcaaaattctcagaataaggtga 793
Query: 605 catttaaaagtagaaaccataattgtttttgaatctttaggtctaactcagaattttttt 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 catttaaaagtagaaaccataattgtttttgaatctttaggtctaactcagaattttttt 853
Query: 665 aaaaaaaattctctttcct 683
|||||||||||||||||
Sbjct: 854 ttaaaaaattctctttcct 872
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space: 722129
Effective search space used: 722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no519_d01.g1 MSMg01no519_d01.g1 CHROMAT_FILE:
MSMg01no519_d01.g1 PHD_FILE: MSMg01no519_d01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:50 2005
(613 letters)
>mm_chr2_78308810_78309822
Length = 1013
Score = 1139 bits (589), Expect = 0.0
Identities = 607/613 (99%)
Strand = Plus / Minus
Query: 1 agtatggacagggcatggattcttagggaagtatcacttttgtagggctctttgctgtca 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 agtatggacagggcgtggattcttagggaagtatcacttttgtagggctctttgctgtca 754
Query: 61 tttctatgggtgttttttttaaacatgctaagggctttagtcaggaaggtttgcctgaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 tttctatgggtgttttttttaaacatgctaagggctttagtcaggaaggtttgcctgaga 694
Query: 121 ttatccccctgctcttggtgtacttggcaggctagaatgaagaaagccagaaaatatttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 ttatccccctgctcttggtgtacttggcaggctagaatgaagaaagccagaaaatatttc 634
Query: 181 ccaacagtgcaaaaactgatgtgttcaaaaaactagtgatggtcagtgctgtgacttgag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 ccaacagtgcaaaaactgatgtgttcaaaaaactagtgatggtcagtgctgtgacttgag 574
Query: 241 ctacagttctcctaaacacagggcgaagccgtaacttctggttattaaagtgcacattag 300
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 573 ctacagttctcctaaacacaggacgaagccgtaacttctggttattaaagtgcacattag 514
Query: 301 gtcaaaatcctcattttgagggatgtccaatgggttagtctcagtcacccattccaacaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gtcaaaatcctcattttgagggatgtccaatgggttagtctcagtcacccattccaacaa 454
Query: 361 aaccaatcatggacgtaagcaccagagaaggtaggaaaggagctttattaaccatgatca 420
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 453 aaccaatcatggacgtaagcaccagagaaggtaagaaaggagctttattaaccatgatca 394
Query: 421 cactgggaatgacaaaggtctactgacctcaactgtgtcttcaaatggtttacagcagtt 480
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 393 cactgggaaggacaaaggtctactgacctcaactgtgtcttcaaatggtttacaacagtt 334
Query: 481 tcagtagaatataggaaaaagaaataaagtggagcattggacatttccatggtaacagtc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tcagtagaatataggaaaaagaaataaagtggagcattggacatttccatggtaacagtc 274
Query: 541 taggtcatcttggcctggctgggacatcatctcaggatctattttgcctcattgaaatca 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 caggtcatcttggcctggctgggacatcatctcaggatctattttgcctcattgaaatca 214
Query: 601 agaaattcttcgt 613
|||||||||||||
Sbjct: 213 agaaattcttcgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space: 604809
Effective search space used: 604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
