Query= MSMg01no519_f01.b1 MSMg01no519_f01.b1 CHROMAT_FILE:
MSMg01no519_f01.b1 PHD_FILE: MSMg01no519_f01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:00 2005
(689 letters)
>mm_chr2_67360331_67361424
Length = 1094
Score = 677 bits (350), Expect = 0.0
Identities = 406/428 (94%), Gaps = 10/428 (2%)
Strand = Plus / Minus
Query: 4 ggaattccataaaatcaattacagtcattgcaaaagtcccctttagatgactgaaaagag 63
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ggaattccataaaatctattacagtcattgcaaaagtcccctttagatgactgaaaagag 366
Query: 64 aggaaatttctctgaccagggagaagaagaggtgagcaactgtcaatgcatttgactgaa 123
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 365 aggaaatttctctgaccagggagaagaagaggtgagcacctgtcaatgcatttgactgaa 306
Query: 124 ggaaatcaacaa------ctatccccccccccacacacacgtttagcaagattgtgaaga 177
|| ||||||||| | | |||||||||||||||||||||||| |||||| ||||||
Sbjct: 305 ggcaatcaacaatccacccca-ccccccccccacacacacgtttagtaagattatgaaga 247
Query: 178 ccatcctttttatttcccatctaaaaagtgtctacttagccagtgtgctggctagtttta 237
|||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 246 ccatcctttttatttcccatctaaaaagtggctacttagccagtgtactggctagttttg 187
Query: 238 tgtcaacttgacacaggctggagttatcacagagaaaggagcttcagttggggaaatacc 297
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 186 tgtcaacttgacacagactggagttatcacagagaaaggagcttcagttggggaaatgcc 127
Query: 298 tccatgagatccagctgtaaggcattttctcaattagtgatcaagagggggaaaggaccc 357
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 126 tccacgagatccagctgtaaggcattttctcaattagtgatcaagagggg-aaaggaccc 68
Query: 358 ttgtgggtggtgccatctctggag-tggtagtcttggttctataagagagcaggctgagc 416
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 67 ttgtgggtggtgccatctctgg-gctggtagtcttggttctataagagagcaggctgagc 9
Query: 417 aagccagg 424
||||||||
Sbjct: 8 aagccagg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1094
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1084
Effective search space: 736036
Effective search space used: 736036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no519_f01.g1 MSMg01no519_f01.g1 CHROMAT_FILE:
MSMg01no519_f01.g1 PHD_FILE: MSMg01no519_f01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:00 2005
(572 letters)
>mm_chr2_67226536_67227507
Length = 972
Score = 1064 bits (550), Expect = 0.0
Identities = 564/569 (99%)
Strand = Plus / Plus
Query: 4 ggcttcccatgattcagctttattacctcctggagaaatcttactctgaacacaccttct 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggcttcccatgattcagctttattacctcctggagaaatcttactctgaacacaccttct 263
Query: 64 aaacatctccctctgagtgttttggatgccttcattttcttattgaccattcactggggc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaacatctccctctgagtgttttggatgccttcattttcttattgaccattcactggggc 323
Query: 124 taatccttgctccatctcttcttctgcctctactaaaatctgtatgagaattcaaaccgc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 324 taatccttgctccatctcttcttctgcctctactaaaatctgtatgagaattcaaactgc 383
Query: 184 atctcagtcatctttgccttcattatcctagaacatttctttagctgtactaattatgca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atctcagtcatctttgccttcattatcctagaacatttctttagctgtactaattatgca 443
Query: 244 acacattgggaatgaatgaaaaattagggcagagttatgtggttgaagaggttatgctga 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 444 acacattgggaatgaatgaaaaattagggcagagttatgtggttgaagaggttacgctga 503
Query: 304 gatagtttatgaagggctactgttaataaactgaaaaaaagaaattacctgaaaccttcc 363
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 504 gatagtttatgaagggctactgttaataaactgaacaaaagaaattacctgaaaccttcc 563
Query: 364 tggaaaagataaagattgaaagaggaatgccaggaattcaaaggcaggaatgagcaatga 423
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tggaaacgataaagattgaaagaggaatgccaggaattcaaaggcaggaatgagcaatga 623
Query: 424 ttttgttgaagccagatgaggacatccttctcttgtctcttatattttggnaatttccct 483
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 624 ttttgttgaagccagatgaggacatccttctcttgtctcttatattttggtaatttccct 683
Query: 484 ttgtttctgtttccatttttatgcctgtataaaacttgtttatgtttatttcaattttta 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttgtttctgtttccatttttatgcctgtataaaacttgtttatgtttatttcaattttta 743
Query: 544 tttctctaagggtagggctcaataattct 572
|||||||||||||||||||||||||||||
Sbjct: 744 tttctctaagggtagggctcaataattct 772
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space: 540644
Effective search space used: 540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
