BAC Information

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BAC

Clone NameMSMg01-519M23
Chromosome2 (Build37)
Map Location 79,296,783 - 79,297,308
singlet/doubletsinglet
Overlap geneNeurod1
Upstream geneLOC383717, LOC100040476, LOC100040494, 4930401B11Rik, Ube2e3, LOC100040526, Itga4, Cerkl
Downstream geneSsfa2, Ppp1r1c, Pde1a, LOC668005, Prdx6-rs1, Dnajc10, Frzb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-519M23.T7 (MSMg01no519_m23.b1)MSMg01-519M23.TJ (MSMg01no519_m23.g1)
ACCAG590992AG590993
length743689
length of high quality
(start - end)		526 (44 - 569)---
definitionCHROMAT_FILE: MSMg01no519_m23.b1 PHD_FILE: MSMg01no519_m23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:38 2005CHROMAT_FILE: MSMg01no519_m23.g1 PHD_FILE: MSMg01no519_m23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTCGTGTCCCGGTGGCGCGGGCGCTAGGGTTATATAGCCGAGTTGCT
GATGCTGAGCGCGGGCGGGGCCGTGAGCTGAGCAACGAGCAGGTCCCTGC
GCCCCGCAATCGCGCACGCGTCCAGACTGAGCGACTCCCGCCCTCATTCA
CCCCTCCCCAGAACTTCCCTCCCGCCCCCTTCCACCACCACTCCCCTCAC
CCCCACAGTACCTCCGCCCCTGCTCCTTCCTCCCCGGCATGCGCCATATG
GTCTTCCCGGTCCAGCCAAGAGCCGGGAACCACGTGACCTGCCTATTTGT
ATGCCGCGGAGCGCTCCATTCCGGCCCCTTTGTGGCCAGAAGAAAGTGGC
CCATCTGTCGCCAGTTAGAGACTCCGCGGACCTGTTTTTACCCGCAGGAG
AGATTAACCCTTTGTGGCAGCAGAAGACAGAGGACATGGGGGGGGGGGGT
TGCGGGAGGCAAGCTGGAAAGGTAAAGAAAGATCACTGAGTCTATGTCCT
AGCCTGAAGACTGCTTTAGCGCAGAGAGGTAGACAGAGGTGAACCACTCA
CAATCCCAGATACTGAGGTGCACTGAAAGGTCCTTCCCTTGACAATGGTC
TCCGGTGGTGGCAGTTGACTTTGTTCTCTCTGGAGAGGCCCATCTCTTAG
CTTCTACTTCTTACCAAAGGCTTTGCTTATTGCCACCAAAGGG

CCATTGTTTNACAACCACCATTGNNNNNNNTTGTTGANAANNNNNNNNCC
CTAAANNNAAANNANNANNNCCNNNNCNNNNCAAAAAAAAAGGNNAAAGA
ACAAGAAAAATTGTCNCTTGNNNANTTTTTTTTTTCCCCCNNNNNNNNNN
NNNANNNNGACACNANANNAAGTTTTCCCCAAAATTCAGGGGNAATAACN
AAAACACCACNCCTGATTTAATTAACAAAAATTTCACGGGGGGAAAAACC
CTCCATATAATAAAGGGGAAGTTGGGTGTGGGGGGTGTTTGGGGGTGGGG
GGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGTGTTGTGTTTGTTGTTG
GTGGGGGTGANACCTCCCCCCCNCNNNNCCCCCAAAAAAACTAATATTTT
TTTTTTTTTTTTGTTGGGTTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GCATTANNNNCCCCCCNCNACCACCACCACCACCCCNNNNCCCCCNNANN
NACNNNNNCNACCCCCCCCCCCCCCCCCCCCCCCCNNCCAACACACCCCC
CCCCAAGTGGTGTTTTCCCCCNCTCNCCCCCNCNNCCCAAATTTTTTGTT
GGGGGGTGGGGGNNNNNNNCCNNNCNNCNNNNANCNNNNANNCCNCCCCA
ATATTTCCTCTTTTTCTTTTTTTTTTTTTATTTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no519_m23.b1 MSMg01no519_m23.b1 CHROMAT_FILE:
MSMg01no519_m23.b1 PHD_FILE: MSMg01no519_m23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:38 2005
         (526 letters)



>mm_chr2_79296579_79297508
          Length = 930

 Score =  975 bits (504), Expect = 0.0
 Identities = 519/526 (98%), Gaps = 4/526 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctcgtgtcccggtggcgcgggcgctagggttatatagccgagttgctgatgctg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctcgtgtcccggtggcgcgggcgctagggttatatagccgagttgctgatgctg 264

                                                                       
Query: 65  agcgcgggcggggccgtgagctgagcaacgagcaggtccctgcgccccgcaatcgcgcac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agcgcgggcggggccgtgagctgagcaacgagcaggtccctgcgccccgcaatcgcgcac 324

                                                                       
Query: 125 gcgtccagactgagcgactcccgccctcattcacccctccccagaacttccctcccgccc 184
           ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 325 gcgtccagactgaacgactcccgccctcattcacccctccccagaactttcctcccgccc 384

                                                                       
Query: 185 ccttccaccaccactcccctcacccccacagtacctccgcccctgctccttcctccccgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccttccaccaccactcccctcacccccacagtacctccgcccctgctccttcctccccgg 444

                                                                       
Query: 245 catgcgccatatggtcttcccggtccagccaagagccgggaaccacgtgacctgcctatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 catgcgccatatggtcttcccggtccagccaagagccgggaaccacgtgacctgcctatt 504

                                                                       
Query: 305 tgtatgccgcggagcgctccattccggcccctttgtggccagaagaaagtggcccatctg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgtatgccgcggagcgctccattccggcccctttgtggccagaagaaagtggcccatctg 564

                                                                       
Query: 365 tcgccagttagagactccgcggacctgtttttacccgcaggagagattaaccctttgtgg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcgccagttagagactccgcggacctgtttttacccgcaggagagattaaccctttgtgg 624

                                                                       
Query: 425 cagcagaagacagaggacatg----gggggggggggttgcgggaggcaagctggaaaggt 480
           |||||||||||||||||||||    |||||||||||||||||||||| ||||||||||||
Sbjct: 625 cagcagaagacagaggacatgtggggggggggggggttgcgggaggcgagctggaaaggt 684

                                                         
Query: 481 aaagaaagatcactgagtctatgtcctagcctgaagactgctttag 526
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aaagaaagatcactgagtctatgtcctagcctgaagactgctttag 730


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 930
Length adjustment: 10
Effective length of query: 516
Effective length of database: 920
Effective search space:   474720
Effective search space used:   474720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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