Query= MSMg01no520_b09.b1 MSMg01no520_b09.b1 CHROMAT_FILE:
MSMg01no520_b09.b1 PHD_FILE: MSMg01no520_b09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:01 2005
(708 letters)
>mm_chr2_56112207_56113314
Length = 1108
Score = 1236 bits (639), Expect = 0.0
Identities = 691/713 (96%), Gaps = 14/713 (1%)
Strand = Plus / Minus
Query: 5 gaattctgttgagagagagagagagagagagagagagacagacagacagac--agac--a 60
|||||||||| |||||||||||||||||| ||| |||||||||||||||| |||| |
Sbjct: 1019 gaattctgtt--gagagagagagagagagacagacagacagacagacagacagagacaga 962
Query: 61 gac--agac--agac--agacagagacagag--agagagacagacagagagagagataca 112
||| |||| |||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 961 gacagagacagagacagagacagagacagagacagagagacagacagagagagagataca 902
Query: 113 agttttgtttcagttttctgtatatgcatttcagcttttccagcacaacttcacagaggt 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 agttttgtttcagttttctgtatatgcatttcagcttttccagcacaacttcacagaggt 842
Query: 173 agctccatctctagggaatattgttgctgcttgctgaaaatcacgtagctatagtatgcc 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 agctccatctctagggaatattgttgctgcttgctgaaaatcacgtagctatagtatgcc 782
Query: 233 agcatgcctctgtattgtaggacttccaagtttcagttctcatttttattggtgaagata 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 agcatgcctctgtattgtaggacttccaagtttcagttctcatttttattggtgaagata 722
Query: 293 tctaattttcagttttatcaattcctatccagattaaaatctgtgctgcccagatgtcat 352
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 721 tctaattttcagttttatcaattcctatccagattaaaatctatgctgcccagatgtcat 662
Query: 353 taacatctagaatgataccagatcagacttctagaatatgtcagacgggacaaatcattc 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 taacatctagaatgataccagatcagacttctagaatatgtcagacgggacaaatcattc 602
Query: 413 ccccctcgtttttaactgctttgtgtgtgacgcctagctcatacttgaatatctttcttg 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ccccctcgtttttaactgctttgtgtgtgacgcctagctcatacttgaatatctttcttg 542
Query: 473 gatagcctgagacctgatgggttaagaagttcagaaacagaaggttgacaacttgatgat 532
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 541 gatagcctgagacctgatgggttaagaaattcagaaacagaaggttgacaacttgatgat 482
Query: 533 attttggaagctgtatcatatctctagtcttttgtattggaaacacatctgttacacatt 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 481 attttggaagctgtatcatatctctagtcttttgtattggaaacacatctgttacacgtt 422
Query: 593 ttatggggtaatcattattatgatacaataagatacttttgatattcttgtctatataat 652
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 421 ttatggggtaatcattattatgatacaataagatacttttgatatttttgtgtatataat 362
Query: 653 ttggactactagtttatgcagatgacccttgacttacaacaaataacaactta 705
|||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 361 ttggactactagtttatgcagatgacccttgacttacaacaaataacacctta 309
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 708
Length of database: 1108
Length adjustment: 10
Effective length of query: 698
Effective length of database: 1098
Effective search space: 766404
Effective search space used: 766404
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no520_b09.g1 MSMg01no520_b09.g1 CHROMAT_FILE:
MSMg01no520_b09.g1 PHD_FILE: MSMg01no520_b09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:01 2005
(674 letters)
>mm_chr2_55974493_55975566
Length = 1074
Score = 1251 bits (647), Expect = 0.0
Identities = 668/675 (98%), Gaps = 1/675 (0%)
Strand = Plus / Plus
Query: 1 taattagaaacgatgcactagctccttaaaattttaaagaaaaatacttgttagtaaata 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 200 taattagaaacgatgcactagctccttaaaattttaaagaaaaatactttttagtaaata 259
Query: 61 tagtaaataatgaccatcttgtttgcatttctgtatgtttacagctctggcttaagattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tagtaaataatgaccatcttgtttgcatttctgtatgtttacagctctggcttaagattt 319
Query: 121 taaaaagtaagaatgtactcagaagaacaaatttagaaagatgtaaatggttttagaagt 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tcaaaagtaagaatgtactcagaagaacaaatttagaaagatgtaaatggttttagaagt 379
Query: 181 gtagtctctgtatgattgta-ttgatatatatgtgcatatatataatcttataagatata 239
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtagtctctgtatgattgtaattgatatatatgtgcatatatataatcttataagatata 439
Query: 240 ggaattcatgtaaatactatttatgtttatgtaaactgcttgattttattctctctaaaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ggaattcatgtaaatactatttatgtttatgtaaactgcttgattttattctctctaaaa 499
Query: 300 tttaatttaatataaataatctttaattattaaacttatagtttcatttcaccaagaaac 359
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tttaatttaatataaataagcgttaattattaaacttatagtttcatttcaccaagaaac 559
Query: 360 ctacaatgcattaatagtgtttctattataaaactagaacattctgagtttaatattaga 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctacaatgcattaatagtgtttctattataaaactagaacattctgagtttaatattaga 619
Query: 420 atattttaggcgattgactactgagaggtaaggagttctttcataggcacagctatcaga 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 atattttaggcgattgactactgagaggtaaggagttctttcataggcacagctatcaga 679
Query: 480 gtgcatataacagtgaaaaacactgagagcaaaatagagtaaccggtttcctatttattt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gtgcatataacagtgaaaaacactgagagcaaaatagagtaaccggtttcctatttattt 739
Query: 540 ttgccatttaaattagctatgccatctttggctagctttcactagtatatatgcccactt 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ttgccatttaaattagctatgccatctttggctagctttcactagtatatatgcccactt 799
Query: 600 tccttggctgtaaaatgaagctaccaagacttgctttgattcttctgaagtagaggggaa 659
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 tccttggctgtaaaataaaactaccaagacttgctttgattcttctgaagtagaggggaa 859
Query: 660 caatgaagggtctct 674
|||||||||||||||
Sbjct: 860 caatgaagggtctct 874
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space: 706496
Effective search space used: 706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
