BAC Information

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BAC

Clone NameMSMg01-520C01
Chromosome2 (Build37)
Map Location 15,794,854 - 15,795,176
singlet/doubletsinglet
Overlap genenone
Upstream geneCacnb2, LOC100041220, Nsun6, Arl5b, LOC633061, LOC667329, LOC227588
Downstream geneLOC625457, Plxdc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-520C01.T7 (MSMg01no520_c01.b1)MSMg01-520C01.TJ (MSMg01no520_c01.g1)
ACCAG591235AG591236
length765762
length of high quality
(start - end)		697 (44 - 740)633 (73 - 705)
definitionCHROMAT_FILE: MSMg01no520_c01.b1 PHD_FILE: MSMg01no520_c01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:04 2005CHROMAT_FILE: MSMg01no520_c01.g1 PHD_FILE: MSMg01no520_c01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNTTTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCAACTGAGGAATAGCAAATGGCTGAGAAACACCTGAAAATTGTTCC
CCATCCTTAATCATCAGGGAAAGGCAAATCAAAACAACCCTGAGATTCTA
CCTCACATCAGTCAGAATGGCTAAGATAAAAGTTCAGGTTACAGCAAATG
TTGGCAAGGATGTGGAGAAAGAAGAGCACTCCTCCATTGTTGGTGGGATT
GAAAGCTGGTACAATACTTCTACAAATCAGTCTGGCAGTTCCTCAGAAAA
TTGGACATAATAGTACTGGGAGATGCAGCAGTACATCTCCTGGCCATATA
CCCAGAAGATGTTCCAACTTGTAATAAGGACACATGTTCCATTATGTTCA
TTGCAGACTTACTTATAATAGCCAGAAGCTGGAAAGAACCCAGTTGTCCC
TCAACAGAGGAATGGGTACAGAAAATGTGGTACATTTACACAATGGAGTA
CTACTCAGCTATTAAAAACAATGAATTTATGAAATTCTTAGGAAAATGAA
TCTAGATGATATCATCTAGATGATATCATCCTGAGTGAGGTAACCCAATC
ACAAAAGAATACACATGATATGCACTCACTAATAAGTGGATATTAGCGCA
GAAACTTAGAATATCCAAGATACAATTTGCAAAACACATGAAACTCANAA
AGAAGGAAGACCAAAGTGTGGATACTTCATTCCTTCTTAGAATGGGTAAT
AAAATACCCATGGGA

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTCTGGAAGCTTTCATCCCTGGATGCT
ACTCAAGCCCACTGCAGCCACTTCTTTCTCAGAGGCCCAGCCCACTGCAG
TGTCCTGCCTCACCACACCAATTCTGGAACAGCAGTGACTGAGACCCTAT
TACGAATAGAGCCTCAAAGAACATGGATGCACAATTCCTTGGGGGAAATA
TATATATATAAGAGTGATAAAGCTGGATTTTGAGGTAGATCAATTGTCAC
CATCGAATAAGTATCTCCTTCCCCATCATCCTTGCCAGAAAGAGTTGCCA
TTTGTTTTATTGATCTTCCATTCTCACGAGAGTAAAATGAACTCTTAAAA
TGAGTTTTAATTTTCATTTTCGTTAAAAACAGGCTAGGTATCCACTAACT
GATGAATGGATAATTAAAAGGATGGATAATTAACTCCATTGTGTCACATT
TACACAATGGAATGTTATTTAACTCTTAAGAGAAATGAAATTATTACACA
GAACGAACAGCGACTGAGGAAACCACCACCTCAAAGACAAATATTATTCT
CTTTTGATGGATGTTATATTTTGAATTTCAATGTGTGGTACAATTAGAAT
GCCTACTAACTACCAACTAACTAGTGATGTGGGTACCTAGTAAGTAATCA
GTGGGGAGGAAAAGATCTCAGATCCTCCTGTACCATGCCTGCCTGGACGC
TGCCATGCTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no520_c01.g1 MSMg01no520_c01.g1 CHROMAT_FILE:
MSMg01no520_c01.g1 PHD_FILE: MSMg01no520_c01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:04 2005
         (633 letters)



>mm_chr2_15794854_15795886
          Length = 1033

 Score =  551 bits (285), Expect = e-161
 Identities = 309/323 (95%), Gaps = 10/323 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctctggaagctttcatccctggatgctactcaagcccactgcagccacttctttctcag 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 323 tctctggaagctttcatccctggacgctactcaagcccactgcagccacttctttctcag 264

                                                                       
Query: 61  aggcccagcccactgcagtgtcctgcctcaccacaccaattctggaacagcagtgactga 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 263 aggcccagcccactgcagtgtcctgcctcaccacaccaactctggaacagcagtgactga 204

                                                                       
Query: 121 gaccctattacgaatagagcctcaaagaacatggatgcacaattccttgggggaaatata 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gactctattacgaatagagcctcaaagaacatggatgcacaattccttgggggaaatata 144

                                                                       
Query: 181 tatata----------taagagtgataaagctggattttgaggtagatcaattgtcacca 230
           ||||||          ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 143 tatatatatatatgtctaagagtgataaagctggattttgaggtagatcaattctcacca 84

                                                                       
Query: 231 tcgaataagtatctccttccccatcatccttgccagaaagagttgccatttgttttattg 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83  tcgaataagtatctccttccccatcatccttgccagaaagagttgccatttgttttattg 24

                                  
Query: 291 atcttccattctcacgagagtaa 313
           |||||||||||||||||||||||
Sbjct: 23  atcttccattctcacgagagtaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space:   637329
Effective search space used:   637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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