NCCTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACTGTGGCCCTTTACTGGATTCTGTGCTCACTAAGATTCTGGCC
ACTGTAATGAGAAGGAGGTGCCTGGAATTTGTGCTGCATAGCTGCTTCAC
AATAAATGGAATAAACGTGATGAAAACTATAAGAAGAAGAATGAATGAAT
AATGAGTCATTAAGTAAATAAATGACCACCATGAAGCCATGATCATATTT
CTGCAGTTGAGTTAAACACATCCAGATAGAATCTATTTTATTCTGTGGGA
CATTCTGAACTGTGGACATGTGGACAGGTATCCATAGAGAGTCCCTTATG
GTATCAATACATGGCTTCTGACTATGATCACGAGGAACTTATAAACTAGC
CAATGGACCTGTGGCTTATTATGTCGTTCTCTTAATCTGAAAATCTTTTA
TGATAGTTATCATAATAACTATCCCTCAAGTGATTTAGATTATATCTACT
TAAATTTCAGTTCTTATGTCCAAAAGAAAAATAATAGCCAAATATAAAAT
GTGTATTTAAAAATCATACTGCTACCCTGAAAACCTGTTATGTTTCACAA
GCAGTTGCATTCCATTTGGCTGCTAACCCACAGTTACTGAACAAAATGGC
ATGACTAANAGTGCATAGAGCAAAGAAATAAGTAGGTATTTTTCTGGCAG
TTTGGAGCACAAATATAACCTCCCAACCCGGAACATCCAAAGGTTACATC
GCAAAACC

CACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGTTCTGAGCCCGGNGC
CTAACAAACACAGAAGTGGATGCTCACAGTCAGCTAATGGATGGATCACA
GTGCTCCCAATGGAGGAGCTAGAGAAAGTAGCCAAGGAGCTAAAGGGATC
TGCAACCCTATAGGTGGAACAACATTATGATCTAACCAGTACCCCGGAGC
TCTTGACTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCAC
TGGAAAGAGAGGCCCATTGGACACGCAAACTTTATATGCCCCAGTACAGG
GGAACGCCAGGGCCAAAAAGGGGGAGTGGGTGGGTAGGGGAGTAGGGGTG
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTN
NNNNNTNNNNNNNNTTTTTTTNTTTNTTTTTTTTTTTTTTTTTTTTTTTT
TTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTN
TTTTTTTTTTTTTTTTTTTTNTTTTTTT

Query= MSMg01no520_d13.b1 MSMg01no520_d13.b1 CHROMAT_FILE:
MSMg01no520_d13.b1 PHD_FILE: MSMg01no520_d13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:12 2005
         (709 letters)



>mm_chr2_114889580_114890688
          Length = 1109

 Score = 1359 bits (703), Expect = 0.0
 Identities = 705/706 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactgtggccctttactggattctgtgctcactaagattctggccactgtaatg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 ggaattcactgtggccctttactggattctgtgctcactaagattctggccactgtaatg 850

                                                                       
Query: 64  agaaggaggtgcctggaatttgtgctgcatagctgcttcacaataaatggaataaacgtg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 agaaggaggtgcctggaatttgtgctgcatagctgcttcacaataaatggaataaacgtg 790

                                                                       
Query: 124 atgaaaactataagaagaagaatgaatgaataatgagtcattaagtaaataaatgaccac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 atgaaaactataagaagaagaatgaatgaataatgagtcattaagtaaataaatgaccac 730

                                                                       
Query: 184 catgaagccatgatcatatttctgcagttgagttaaacacatccagatagaatctatttt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 catgaagccatgatcatatttctgcagttgagttaaacacatccagatagaatctatttt 670

                                                                       
Query: 244 attctgtgggacattctgaactgtggacatgtggacaggtatccatagagagtcccttat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 attctgtgggacattctgaactgtggacatgtggacaggtatccatagagagtcccttat 610

                                                                       
Query: 304 ggtatcaatacatggcttctgactatgatcacgaggaacttataaactagccaatggacc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 ggtatcaatacatggcttctgactatgatcacgaggaacttataaactagccaatggacc 550

                                                                       
Query: 364 tgtggcttattatgtcgttctcttaatctgaaaatcttttatgatagttatcataataac 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 tgtggcttattatgtcgttctcttaatctgaaaatcttttatgatagttatcataataac 490

                                                                       
Query: 424 tatccctcaagtgatttagattatatctacttaaatttcagttcttatgtccaaaagaaa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tatccctcaagtgatttagattatatctacttaaatttcagttcttatgtccaaaagaaa 430

                                                                       
Query: 484 aataatagccaaatataaaatgtgtatttaaaaatcatactgctaccctgaaaacctgtt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 aataatagccaaatataaaatgtgtatttaaaaatcatactgctaccctgaaaacctgtt 370

                                                                       
Query: 544 atgtttcacaagcagttgcattccatttggctgctaacccacagttactgaacaaaatgg 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 atgtttcacaagcagttgcattccatttggctgctaacccacagttactgaacaaaatgg 310

                                                                       
Query: 604 catgactaanagtgcatagagcaaagaaataagtaggtatttttctggcagtttggagca 663
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 catgactaaaagtgcatagagcaaagaaataagtaggtatttttctggcagtttggagca 250

                                                         
Query: 664 caaatataacctcccaacccggaacatccaaaggttacatcgcaaa 709
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 caaatataacctcccaacccggaacatccaaaggttacatcgcaaa 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 709
Length of database: 1109
Length adjustment: 10
Effective length of query: 699
Effective length of database: 1099
Effective search space:   768201
Effective search space used:   768201
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)