Query= MSMg01no520_o23.b1 MSMg01no520_o23.b1 CHROMAT_FILE:
MSMg01no520_o23.b1 PHD_FILE: MSMg01no520_o23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:07 2005
(695 letters)
>mm_chr2_178412092_178413181
Length = 1090
Score = 1141 bits (590), Expect = 0.0
Identities = 637/660 (96%), Gaps = 13/660 (1%)
Strand = Plus / Minus
Query: 44 ggccttaaacagtggagatcatctgagagacagctccaggggacccaactctgctaaccc 103
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1090 ggccttaaacagtggagatcatctgagagtcagctccaggggacccaactctgctaaccc 1031
Query: 104 caaaccatgctggcccagctttcatcatgacctaacctcccctcagctccacaccctgca 163
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1030 caaaccatgctggcccagctttcatcatgacctaacctcacctcagctccacaccctgca 971
Query: 164 cctccttccaggaggggtgaagcttgccctctctgtaatccatggataccagaagagaca 223
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 970 cctccttccaggaggggtgaagcttgccctctctgtaatttatggataccagaagagaca 911
Query: 224 ttgccctactga--------gcatggcaggatggattaattgaggagtgtttcatcagct 275
||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 910 ttgccttactgagcaggagtgcatggcaggatggattaattgaggagtgtttcatcagct 851
Query: 276 tctacagctgccggcaagctcccgaatgggaagaaatctccaggagacatgtaccctgtg 335
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 850 tctacagctgccggcaagctcccgaatgggaagaaatctccaggagatatgtaccctgtg 791
Query: 336 tgtgttcagagaatgagcattctgtatccctctgaaaggcagaagctgaggtgcagagaa 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 tgtgttcagagaatgagcattctgtatccctctgaaaggcagaagctgaggtgcagagaa 731
Query: 396 accagaggtaccttctctgtctccggtgcgctctgggagttgatggcctttaagaatgac 455
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 730 accagaggtaccttctctgtctccggtgtgctctgggagttgatggtctttaagaatgac 671
Query: 456 catgaaaggccctcttgttcctccatagacagctggctcccatgtctggatggtgaacct 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 catgaaaggccctcttgttcctccatagacagctggctcccatgtctggatggtgaacct 611
Query: 516 ttaatgggacttttctcttcctagggctccaagttctgtcctcacaggagaccttggaca 575
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 610 ttaatgggactt-----ttcctagggctccaagttctgtcctcacaggagcccttggaca 556
Query: 576 ccctggtacctggcaccctccacaggcacactttttctgcatttgcagcttccaaggtct 635
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 555 ccctggtacctggcaccctccacaggcacattttttctgcatttgcagcttccaaggtct 496
Query: 636 gggctggtgtcggtctgcatattctttatcaaagtgagtttatttttttaaatttggaag 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 gggctggtgtcggtctgcatattctttatcaaagtgagtttatttttttaaatttggaag 436
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1090
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1080
Effective search space: 739800
Effective search space used: 739800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no520_o23.g1 MSMg01no520_o23.g1 CHROMAT_FILE:
MSMg01no520_o23.g1 PHD_FILE: MSMg01no520_o23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:07 2005
(529 letters)
>mm_chr2_178372063_178372991
Length = 929
Score = 992 bits (513), Expect = 0.0
Identities = 525/529 (99%)
Strand = Plus / Plus
Query: 1 gctcacactgttttatacagtccaggactggtgcctaggggatggttccacctacagtgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gctcacactgttttatacagtccaggactggtgcctaggggatggttccacctacagtgg 260
Query: 61 gcagttcttgcccacttcagttaaaacttagcttgcacagagatctagtctcaggcatgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcagttcttgcccacttcagttaaaacttagcttgcacagagatctagtctcaggcatgc 320
Query: 121 tcccagggaataaaggcctgtctagtagacaatgaacaagagccatcaggttggcccatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcccagggaataaaggcctgtctagtagacaatgaacaagagccatcaggttggcccatc 380
Query: 181 aaatacatcacaactttaacaacagcccaacatccaggagaggaatggctgttggtgagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatacatcacaactttaacaacagcccaacatccaggagaggaatggctgttggtgagc 440
Query: 241 ccctttcctttttgcccagactctgtatctactctgaggcttacctagccagtcacccca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccctttcctttttgcccagactctgtatctactctgaggcttacctagccagtcacccca 500
Query: 301 tcctcagcctcctttaatcagaatgggtttccttgccttacttgggagattcagggatgg 360
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 501 tcctcagcctcctttaatcagaatgggtttcctttccttacttgggagattcagggatgg 560
Query: 361 agctcacatgcattacttttccgttgctgtggggaaataaccggcggaaaccaccttggg 420
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 561 agctcacatgcattacttttctgttgctgtggggaaataactggcggaaaccaccttggg 620
Query: 421 aagaaaggtttatttgggatgcacttcatcatggtggggagctgtcagcaagacagcgaa 480
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagaaaggtttatttgggatgcagttcatcatggtggggagctgtcagcaagacagcgaa 680
Query: 481 tcacatttcatctgcacacagccaaagagagggagggagagagcatgag 529
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcacatttcatctgcacacagccaaagagagggagggagagagcatgag 729
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space: 476961
Effective search space used: 476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
