Query= MSMg01no520_p07.b1 MSMg01no520_p07.b1 CHROMAT_FILE:
MSMg01no520_p07.b1 PHD_FILE: MSMg01no520_p07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:08 2005
(686 letters)
>mm_chr2_49770079_49771164
Length = 1086
Score = 1112 bits (575), Expect = 0.0
Identities = 647/683 (94%), Gaps = 22/683 (3%)
Strand = Plus / Plus
Query: 5 gaattcagcttaattccaagccttttttaatagatcttgattcctgggtgtagcatgttg 64
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 225 gaattcagcttaattccaagcctttttaaatagatcttgattcctgggtgtagcatgttg 284
Query: 65 gcttcccttcctggcatgatgccatcattaggctgataagaattcttcttatcattactt 124
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 gctgcccttcctggcatgatgccatcattaggctgataagaattcttcttatcattactc 344
Query: 125 gtagtcgataagaaattttgaacagaataaataaagac-aggttctacctctcctgctgg 183
|| |||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 345 gtggtcgataaaaaattttgaaca-aataaataaagacaaggttctacctctcctgctgg 403
Query: 184 gcagttagtgttgaggcttgcctgttaaaaacattattcggtggctcacaatttgccacc 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gcagttagtgttgaggcttgcctgttaaaaacattattcggtggctcacaatttgcc--- 460
Query: 244 gcagctcacaatttgccacccctcccctaaagatacaaatgttatatagtgccctattaa 303
|| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 ----------at-------ccctcccctaaagatacaaatgttatatagtgccctattaa 503
Query: 304 aacctatgtcctgcgtaaaactgcactgatgtgatagcttggaaccgtgttttgatggaa 363
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 504 aacctatgtccttcgtaaaactgcactgatgtgatagcttggaactgtgttttgatggaa 563
Query: 364 agacaattagtcaggcaatattttactttaattcactgtcttatatctcatcaatctgtg 423
|| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 564 aggcaattagtcgggcaatattttactttaatttactgtcttatatctcatcaatctgtg 623
Query: 424 cttccttttgtgtttgttcacaagccaactgctttttaacatgtgcctttatttattaat 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cttccttttgtgtttgttcacaagccaactgctttttaacatgtgcctttatttattaat 683
Query: 484 ccagaaaaatgttggtttgtgaatcatcagtatcatatataagtactcagtataagacat 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ccagaaaaatgttggtttgtgaatcatcagtatcatatataagtactcagtataagacat 743
Query: 544 ggtgcttgccttcaaagtgttacagttaagagaaaggaaaatatatataattataacact 603
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ggtgcttgccttccaagtgttacagttaagagaaaggaaaatatatataattataacact 803
Query: 604 ctgttggtaaacatacacaagcatttatttgtgtgacttacaataaagatggagttttat 663
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 804 ctgttggtaaacatatacaagcatttatttgtgtgacttacaataaggatggagttttat 863
Query: 664 aaataatatagtaaatataatgc 686
||| |||||||||||||||||||
Sbjct: 864 aaacaatatagtaaatataatgc 886
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space: 727376
Effective search space used: 727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no520_p07.g1 MSMg01no520_p07.g1 CHROMAT_FILE:
MSMg01no520_p07.g1 PHD_FILE: MSMg01no520_p07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:09 2005
(655 letters)
>mm_chr2_49949534_49950588
Length = 1055
Score = 1116 bits (577), Expect = 0.0
Identities = 589/593 (99%)
Strand = Plus / Minus
Query: 1 acaaactatgaactaaaacagacatttaaaaagattagcaatcctagtctgtcccttgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 acaaactatgaactaaaacagacatttaaaaagattagcaatcctagtctgtcccttgag 534
Query: 61 gcctggagagaggacaaagtgctgaggggagggtggtcacagaggtgggacatttatctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 gcctggagagaggacaaagtgctgaggggagggtggtcacagaggtgggacatttatctc 474
Query: 121 aactaagcaaggaagaggaatctcacaaagtgccacgcaataatacaactagagtgccaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 aactaagcaaggaagaggaatctcacaaagtgccacgcaataatacaactagagtgccaa 414
Query: 181 gccatgtcattttaaagagtgtttttctctttaacatatagattacctgagaagctgcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gccatgtcattttaaagagtgtttttctctttaacatatagattacctgagaagctgcag 354
Query: 241 gtctgggagaggctctggaacaggaatttcttcactgaggagattttacatctctaaagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 gtctgggagaggctctggaacaggaatttcttcactgaggagattttacatctctaaagg 294
Query: 301 aagtctctcctatggactccagagaagactaggacagtggaaagcaagaacttgaagcta 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 293 aagtctctcctatggactccagagaagactaggacagtggaaatcaagaacttgaagcta 234
Query: 361 taaaaagcgtttgtgtttgcttcctccttttgttctctcaaccaggatgagaagggggtc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 taaaaagcgtttgtgtttgcttcctccttttgttctctcaaccaggatgagaagggggtc 174
Query: 421 tccaagtcaccacaaactctcatcaatggggaaggctctggcttaaaccagcacagcaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 tccaagtcaccacaaactctcatcaatggggaaggctctggcttaaaccagcacagcaaa 114
Query: 481 tcttgccctacgtcgtgtttttcttggcccataataccaccaccagcgctcttccttctg 540
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 113 tcttgccctacgttgtgtttttcttggcccataataccaccaccagtgctcttccttctg 54
Query: 541 tgactcacttgaagacgtgccttaggcctgaatcaaagctgtttctaagaact 593
||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 53 tgactcacttgaagatgtgccttaggcctgaatcaaagctgtttctaagaact 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space: 674025
Effective search space used: 674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
