BAC Information

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BAC

Clone NameMSMg01-520P11
Chromosome2 (Build37)
Map Location 181,324,860 - 181,357,421
singlet/doubletdoublet
Overlap geneZnf512b, Samd10, Prpf6
Upstream geneOgfr, Col9a3, Tcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4, Kcnq2, Eef1a2, 2700038C09Rik, Ptk6, Srms, LOC622592, BC051628, BC006779, Gmeb2, EG665467, Stmn3, Rtel1, Arfrp1, Zgpat, Lime1, Btbd4, BC050777, Tpd52l2, Dnajc5, Uckl1
Downstream geneLOC100039697, Sox18, Tcea2, Rgs19, 4930526D03Rik, Oprl1, LOC665538, Myt1, Pcmtd2, Polr3k, EG432881, LOC672125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-520P11.T7 (MSMg01no520_p11.b1)MSMg01-520P11.TJ (MSMg01no520_p11.g1)
ACCAG591873AG591874
length763760
length of high quality
(start - end)		719 (45 - 763)518 (74 - 591)
definitionCHROMAT_FILE: MSMg01no520_p11.b1 PHD_FILE: MSMg01no520_p11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:09 2005CHROMAT_FILE: MSMg01no520_p11.g1 PHD_FILE: MSMg01no520_p11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(181,356,707 - 181,357,421)(181,324,860 - 181,325,377)
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTCCCAGTGCTTACAGAGTTAAGCTTTATCAACAGAGCATATGGA
CTTTGTTGGGAACACACTCATCCCCTATAATGGCCATATACCACCAAGGG
ACAGACTAGCAGGACAAACGGGGCTGGACCTTTATTTGTTTTGCTGTGTG
TGTTGGCATGCCCTATAGAGAATCACACAAATACTCACCTGTAGAAAGAA
TCTCACCTACTCTATGACAGGGCAGAGTATCAATTTCATGATAAAACACA
AAGATAAACTTTACACATTTCTGTTTTTAATTATTGAGTGTTTTGTTGCA
CACGCTAGGTAAGTGACGAACAACTGAGCAACATCCCCCAAATATTTTGC
TTTTTCCCCATTTCAGTAATAAGAAAAGATGCATTACGAATTCTCACCTG
GCTAAGCCTCATGTCCATCAGGGTATTCCTTGCCTGGCCAATCTTCCTCA
TGTCCAGCTCCCCTGTACCAGGTGTCATCAATCCAGGTGTCATTCCACCT
GGGTATGGAGTGTTCAGGCCTCCCGGGTAGGGTGTGTTCAGACCTCCAAA
TTGCTAGGGTGAGGATAAGACAGTGGTTTGAACTGTCATACTGAAGATCC
CCACCCACCTCGTCTCTATGTCCTAATGAGGCATGGCTACACTGACTCTT
GCCACAGCACAGTTAGCTACAAAAACAATCAACACTCACCCTTCTCACCA
CACCCTCATCCAG

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATCTTTCCACTGGTTCATCAGAGAGAG
CTGGGCAGAGGAAAAGGCCAAGCTGCTGACCTGTAGCTACCCAGACTTAA
AGTTCCCCCAAGCCAAATAAGCCCTTCAACCTCAAGAGCAGACCAGGAAT
TCAAGCCATGCTGCAGACCTATGCTGATGACTACTCACAGCCCACTGGGA
CTTTGTAACAGACACAACGGCCCTAGGGTACATGCTCAAACAAACTGGCA
CAGGATATATGGAGGGCTGGTAAGGGCATGGAAGTGGCCTTCACAGACTA
AATTGAATGGACCCCACTCTAACCCTCAGGGAGCTCACAGGAATATCTCG
GAGAGCTTGGTTCTCGGCTTTCGGCCTCCCTTTTTTCTTCCCTTCTGTCT
TGTCACTGGCTGAGTTTCCAGGGTCAAAGCAGAGTGGGGCCTGGCTAGGC
ACTGTATGTCCACTGTGGACCACTGGCATCCCTATAGTACAGGAGACAGT
AAGGCTCAGTGGTTGCCCAATATCACCGACCCCCAAGGGCGGTGGCCCAG
ACTGAGTCTTGGCTCACCCAGATAAAGGCCCAGTGGCTGGAGTTAACCCA
GGACAAGAGCATGGCTACAATAAGGCTGACAATCTCCACCCCACAAAGGT
CCTCAGGATACCCAAGGAGGTAACTCTACCACTGGCTATCTGTATCCTCT
AGAACTGATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no520_p11.b1 MSMg01no520_p11.b1 CHROMAT_FILE:
MSMg01no520_p11.b1 PHD_FILE: MSMg01no520_p11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:09 2005
         (719 letters)



>mm_chr2_181356503_181357621
          Length = 1119

 Score = 1382 bits (715), Expect = 0.0
 Identities = 715/715 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattcccagtgcttacagagttaagctttatcaacagagcatatggactttgttg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 919 gaattcattcccagtgcttacagagttaagctttatcaacagagcatatggactttgttg 860

                                                                       
Query: 65  ggaacacactcatcccctataatggccatataccaccaagggacagactagcaggacaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 ggaacacactcatcccctataatggccatataccaccaagggacagactagcaggacaaa 800

                                                                       
Query: 125 cggggctggacctttatttgttttgctgtgtgtgttggcatgccctatagagaatcacac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 cggggctggacctttatttgttttgctgtgtgtgttggcatgccctatagagaatcacac 740

                                                                       
Query: 185 aaatactcacctgtagaaagaatctcacctactctatgacagggcagagtatcaatttca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 aaatactcacctgtagaaagaatctcacctactctatgacagggcagagtatcaatttca 680

                                                                       
Query: 245 tgataaaacacaaagataaactttacacatttctgtttttaattattgagtgttttgttg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tgataaaacacaaagataaactttacacatttctgtttttaattattgagtgttttgttg 620

                                                                       
Query: 305 cacacgctaggtaagtgacgaacaactgagcaacatcccccaaatattttgctttttccc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 cacacgctaggtaagtgacgaacaactgagcaacatcccccaaatattttgctttttccc 560

                                                                       
Query: 365 catttcagtaataagaaaagatgcattacgaattctcacctggctaagcctcatgtccat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 catttcagtaataagaaaagatgcattacgaattctcacctggctaagcctcatgtccat 500

                                                                       
Query: 425 cagggtattccttgcctggccaatcttcctcatgtccagctcccctgtaccaggtgtcat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cagggtattccttgcctggccaatcttcctcatgtccagctcccctgtaccaggtgtcat 440

                                                                       
Query: 485 caatccaggtgtcattccacctgggtatggagtgttcaggcctcccgggtagggtgtgtt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 caatccaggtgtcattccacctgggtatggagtgttcaggcctcccgggtagggtgtgtt 380

                                                                       
Query: 545 cagacctccaaattgctagggtgaggataagacagtggtttgaactgtcatactgaagat 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cagacctccaaattgctagggtgaggataagacagtggtttgaactgtcatactgaagat 320

                                                                       
Query: 605 ccccacccacctcgtctctatgtcctaatgaggcatggctacactgactcttgccacagc 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ccccacccacctcgtctctatgtcctaatgaggcatggctacactgactcttgccacagc 260

                                                                  
Query: 665 acagttagctacaaaaacaatcaacactcacccttctcaccacaccctcatccag 719
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 acagttagctacaaaaacaatcaacactcacccttctcaccacaccctcatccag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 719
Length of database: 1119
Length adjustment: 10
Effective length of query: 709
Effective length of database: 1109
Effective search space:   786281
Effective search space used:   786281
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no520_p11.g1 MSMg01no520_p11.g1 CHROMAT_FILE:
MSMg01no520_p11.g1 PHD_FILE: MSMg01no520_p11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:09 2005
         (518 letters)



>mm_chr2_181324660_181325577
          Length = 918

 Score =  994 bits (514), Expect = 0.0
 Identities = 517/518 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atctttccactggttcatcagagagagctgggcagaggaaaaggccaagctgctgacctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atctttccactggttcatcagagagagctgggcagaggaaaaggccaagctgctgacctg 260

                                                                       
Query: 61  tagctacccagacttaaagttcccccaagccaaataagcccttcaacctcaagagcagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagctacccagacttaaagttcccccaagccaaataagcccttcaacctcaagagcagac 320

                                                                       
Query: 121 caggaattcaagccatgctgcagacctatgctgatgactactcacagcccactgggactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caggaattcaagccatgctgcagacctatgctgatgactactcacagcccactgggactt 380

                                                                       
Query: 181 tgtaacagacacaacggccctagggtacatgctcaaacaaactggcacaggatatatgga 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtaacagacacaagggccctagggtacatgctcaaacaaactggcacaggatatatgga 440

                                                                       
Query: 241 gggctggtaagggcatggaagtggccttcacagactaaattgaatggaccccactctaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggctggtaagggcatggaagtggccttcacagactaaattgaatggaccccactctaac 500

                                                                       
Query: 301 cctcagggagctcacaggaatatctcggagagcttggttctcggctttcggcctcccttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctcagggagctcacaggaatatctcggagagcttggttctcggctttcggcctcccttt 560

                                                                       
Query: 361 tttcttcccttctgtcttgtcactggctgagtttccagggtcaaagcagagtggggcctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttcttcccttctgtcttgtcactggctgagtttccagggtcaaagcagagtggggcctg 620

                                                                       
Query: 421 gctaggcactgtatgtccactgtggaccactggcatccctatagtacaggagacagtaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctaggcactgtatgtccactgtggaccactggcatccctatagtacaggagacagtaag 680

                                                 
Query: 481 gctcagtggttgcccaatatcaccgacccccaagggcg 518
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gctcagtggttgcccaatatcaccgacccccaagggcg 718


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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