Query= MSMg01no520_p22.b1 MSMg01no520_p22.b1 CHROMAT_FILE:
MSMg01no520_p22.b1 PHD_FILE: MSMg01no520_p22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:12 2005
(664 letters)
>mm_chr2_174142811_174143873
Length = 1063
Score = 944 bits (488), Expect = 0.0
Identities = 505/512 (98%), Gaps = 5/512 (0%)
Strand = Plus / Minus
Query: 5 gaattctaagcaaaatcctaaccttgggagggtgaggagaaaaaaaaaagtccatgcttt 64
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 507 gaattctaagcaaaatcctaaccttgggagggtgaggag-aaaaaaaaagtccatgcttt 449
Query: 65 gagctggcctgtgtctgcagcaaggtgcctgcctgcacagccatttttcatggtggggaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gagctggcctgtgtctgcagcaaggtgcctgcctgcacagccatttttcatggtggggaa 389
Query: 125 tggtagcctcaccatttctggctttgcagaccagtcattgtcaggatccacaatttagca 184
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tggtagcctcaccatgtctggctttgcagaccagtcattgtcaggatccacaatttagca 329
Query: 185 aaacccagaggccgttctccctgctggcttagctaaggggcaagaggaagctatttagaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 aaacccagaggccgttctccctgctggcttagctaaggggcaagaggaagctatttagaa 269
Query: 245 ggaagtggagaagtttgatcaggaaagataaaatccaaatgcctttaatgcttgaaggga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ggaagtggagaagtttgatcaggaaagataaaatccaaatgcctttaatgcttgaaggga 209
Query: 305 aagcgtgtgtgtgcgtgcgtgcgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgt 364
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 208 aagcgtgtgtgtgcgtgcgtg--tg--tgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgt 153
Query: 365 gcgtgtctgtgtatgtgcgtgtatatgtgtgtgtgtatactattgttgccagccttcctg 424
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 gtgtgtctgtgtatgtgcgtgtatatgtgtgtgtgtatactattgttgccagccttcctg 93
Query: 425 ctgcaagcttgcaataaagctgtaacttacacgcataattaatcaccttgttcctagctg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ctgcaagcttgcaataaagctgtaacttacacgcataattaatcaccttgttcctagctg 33
Query: 485 agtgtcacccaagctgcagggaaggtcatttc 516
||||||||||||||||||||||||||||||||
Sbjct: 32 agtgtcacccaagctgcagggaaggtcatttc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1063
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1053
Effective search space: 688662
Effective search space used: 688662
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no520_p22.g1 MSMg01no520_p22.g1 CHROMAT_FILE:
MSMg01no520_p22.g1 PHD_FILE: MSMg01no520_p22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:12 2005
(657 letters)
>mm_chr2_173976375_173977431
Length = 1057
Score = 1205 bits (623), Expect = 0.0
Identities = 652/669 (97%), Gaps = 12/669 (1%)
Strand = Plus / Plus
Query: 1 gatttgggctcattcttggtcaaactacttaaaaaaaaagtctcgctttttttgttgttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gatttgggctcattcttggtcaaactacttaaaaaaaaagtctcgctttttttgttgttg 260
Query: 61 ccattttttgacagttcttaatgcaatattaacaaattttggtgcctgctctgaggtttc 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctattttttgacagttcttaatgcaatattaacaaattttggtgcctgctctgaggtttc 320
Query: 121 tttaatgtgtttatcaacacacacacacacacacacacacacacaca------------a 168
||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 tttaatgtgtttatcaacacacacacacacacacacacacacacacacacacacacacaa 380
Query: 169 atatcagcaatacacactcagagaaataaattggaactgtatcccagtcaaaataactcc 228
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 atatcagcaatacacactcagagaaataaattggaactgtatcccaatcaaaataactcc 440
Query: 229 aaaactttaaatatttagcatatatgtaaccacagaataaagagacctttacaatgacag 288
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 441 aaaactttaaatatttagcatatatgtaaccacagaataaagatacctttacaatggcag 500
Query: 289 ccacacggcattgaataagaaatcacagatgttatatgtgatggaaagacagtccatgct 348
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccacaaggcattgaataagaaatcacagatgttatatgtgatggaaagacagtccatgct 560
Query: 349 cctggattggcagacttgatattgtgaagatggatatacaaccagaactcatctacaggt 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctggattggcagacttgatattgtgaagatggatatacaaccagaactcatctacaggt 620
Query: 409 ttaatgaaatgcctttgaaatttttaatgtagtatttcacagatttagaataaaatcaga 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttaatgaaatgcctttgaaatttttaatgtagtatttcacagatttagaataaaatcaga 680
Query: 469 aattcatacagagccatgaaagaccacagatatcccaagtaaccctgagaagtaagaatg 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aattcatacagagccatgaaagaccacagatatcccaagtaaccctgagaagtaagaatg 740
Query: 529 ctgctggagacatctcaatatttgtcttcaaattatactacagagctatagagacacaga 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctgctggagacatctcaatatttgtcttcaaattatactacagagctatagagacacaga 800
Query: 589 cagcctgaggactatagagaccgagacagcctggggactacagagacagagacagcttga 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cagcctgaggactatagagaccgagacagcctggggactacagagacagagacagcttga 860
Query: 649 gagctgtag 657
|||||||||
Sbjct: 861 gagctgtag 869
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space: 677409
Effective search space used: 677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
