Query= MSMg01no521_b20.b1 MSMg01no521_b20.b1 CHROMAT_FILE:
MSMg01no521_b20.b1 PHD_FILE: MSMg01no521_b20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:21 2005
(692 letters)
>mm_chr2_25705447_25706535
Length = 1089
Score = 1292 bits (668), Expect = 0.0
Identities = 685/692 (98%), Gaps = 3/692 (0%)
Strand = Plus / Minus
Query: 1 gataactactgtgcacctcatactagggggtgcgtctttgagaggcatgcagacttggtg 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 889 gataactactgtgcacctcatactagggggtgcgtcttcgagaggcatgcagacttggtg 830
Query: 61 caggataagtcggaaaccacaatcacccctctcttcactttggccagaaacacttaagtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 caggataagtcggaaaccacaatcacccctctcttcactttggccagaaacacttaagtc 770
Query: 121 tcttttttcttccaagattggaagtgggggaggcagcagcaataacaacaacaacaaaaa 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 769 tcttttttcttccaagattggaagtgggggaggcagcagcaat---aacaacaacaaaaa 713
Query: 181 aaactgtcctgtcccctcccccagggtccaggctcttgtccttgagcgccccctgctggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 aaactgtcctgtcccctcccccagggtccaggctcttgtccttgagcgccccctgctggt 653
Query: 241 cacaccttgcaccctgaccccgtggggcttccgtgggacactgggaatggggaggacctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 cacaccttgcaccctgaccccgtggggcttccgtgggacactgggaatggggaggacctc 593
Query: 301 cacatttaaagtgggcaagcatccatggaattgcacggctactgtgtcctgccagctttt 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 cacatttaaagtgggcaagcatccatggaattgcacggctactgtgtcctgccagctttc 533
Query: 361 cctttcttcctctccttccaacagtgctcagtaggatagaggcctgcacctagagcccca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 cctttcttcctctccttccaacagtgctcagtaggatagaggcctgcacctagagcccca 473
Query: 421 gtgttctagggcacccagcaagaacctgctagactaaagtgctgtctggaccccaggtat 480
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 472 gtgttctagggcacccagccagaacctgctaggctaaagtgctgtctggaccccaggtat 413
Query: 481 cacagtgacctctgccagccctcagtcacatgagcacctatcaacaggtagtggagtagg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 cacagtgacctctgccagccctcagtcacatgagcacctatcaacaggtagtggagtagg 353
Query: 541 tacagtaccaccctcaggtgctacaccctcgtgatgcagggcaacattctggcaaacagg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 tacagtaccaccctcaggtgctacaccctcgtgatgcagggcaacattctggcaaacagg 293
Query: 601 ttattcataagataccctgaaaccttgaatatggaccttaagggctccaggagcctttgc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 ttattcataagataccctgaaaccttgaatatggaccttaagggctccaggagcctttgc 233
Query: 661 tgtccagtgtcttgaagaaccctctccaaacc 692
||||||||||||||||||||||||||||||||
Sbjct: 232 tgtccagtgtcttgaagaaccctctccaaacc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1089
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1079
Effective search space: 735878
Effective search space used: 735878
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no521_b20.g1 MSMg01no521_b20.g1 CHROMAT_FILE:
MSMg01no521_b20.g1 PHD_FILE: MSMg01no521_b20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:21 2005
(619 letters)
>mm_chr2_25537021_25538039
Length = 1019
Score = 1166 bits (603), Expect = 0.0
Identities = 615/619 (99%)
Strand = Plus / Plus
Query: 1 ctttgctagaattctcgagcctgaagacggggcaggtggtttttcactgggggcaaatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttgctagaattctcgagcctgaagacggggcaggtggtttttcactgggggcaaatta 260
Query: 61 tagaccctggaatggcagaggctgaggtgcctggctaggcaagagctgttgaataggtca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagaccctggaatggcagaggctgaggtgcctggctaggcaagagctgttgaataggtca 320
Query: 121 ggacattattgaggcagccactggactatgagacttcaaccatccatgccttctgagcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggacattattgaggcagccactggactatgagacttcaaccatccatgccttctgagcag 380
Query: 181 gaaggcaactgagtgctgcacagtaggagagcacagatggcatctacctagtgggttagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaggcaactgagtgctgcacagtaggagagcacagatggcatctacctagtgggttagc 440
Query: 241 atccacaggctgcctagcaggaagacacagaatgcacagttggtctagtggagaggtcag 300
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 atccacaggctgcctagcaggaagacacagaatgcacagttggtctagtggggaggtcac 500
Query: 301 tatccatgagcttcctagcagggagttacagccagggctctagctcttcttttcctgccc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatccatgagcttcctagcagggagttacagccagggctctagctcttcttttcctgccc 560
Query: 361 atggctttagctgcttgctgggagtgggcgtgggggtgatggcggtggcatggaactctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atggctttagctgcttgctgggagtgggcgtgggggtgatggcggtggcatggaactctc 620
Query: 421 aaaggcttgagtctgtgggccctcattccaaatgggatatcaggtctggaaatggtggaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaggcttgagtctgtgggccctcattccaaatgggatatcaggtctggaaatggtggaa 680
Query: 481 tgatgtcatctactagaaagtaacacatgtgggtagggtggggtaagggggtcaaagctt 540
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgatgtcatttactagaaagtaacacatgtgggtagggtggggtaagggggtcaaagctt 740
Query: 541 gtgcacacacgagtgcacctccccatctcttccctgccctggaagagcatcactatcccc 600
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtgcacacacgaatgcacctccccatctcttccctgccctggaagagcatcactatcccc 800
Query: 601 tcagactctatatatagcc 619
|||||||||||||||||||
Sbjct: 801 tcagactctatatatagcc 819
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space: 614481
Effective search space used: 614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
