BAC Information

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BAC

Clone NameMSMg01-522H22
Chromosome2 (Build37)
Map Location 84,901,753 - 84,902,151
singlet/doubletsinglet
Overlap geneTnks1bp1
Upstream geneLOC383725, Calcrl, Tfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1
Downstream geneAgtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-522H22.T7 (MSMg01no522_h22.b1)MSMg01-522H22.TJ (MSMg01no522_h22.g1)
ACCAG593038AG593039
length770764
length of high quality
(start - end)		570 (52 - 621)407 (81 - 487)
definitionCHROMAT_FILE: MSMg01no522_h22.b1 PHD_FILE: MSMg01no522_h22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:06 2005CHROMAT_FILE: MSMg01no522_h22.g1 PHD_FILE: MSMg01no522_h22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTACTTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTGTTCATTTCTGAGCCCCATTTTTAATGGGGTTATTC
GATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAG
TCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTG
GTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGT
TTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGC
TGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCC
CCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGATTTCCT
TGATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATT
CGCATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAA
TATGTACTCACTGATAAGTGGATATTAGCCCAAAACCTAGGATACCCAAG
ATATAAGATACAATTTCCTAAACACATGAAACTCAAGAAAAATGAATACT
GAAGTGTGGACACTATGCCCCTCCTTACAAGTGGGAACAAAACACCCTTG
GAAGGAGTTACAGAGACNAAAGTTGGAGCTGAGATGAAAGGATGGACCAT
GTAGAGACTGCCCTATTCAGGGATCCACCCCATATTCAGCATTCAAACGC
TGACACCATTGCATAAACTA

NTTTAACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTGTTTAAGAATGAGGATC
CTTAGGCCCAGAGTAGTTAAGTGATTTGCTCAAGGTCACACAGCTGAAAT
CCTGGCAGCGGTCTTCTGCTAAAGTGGGGCTCTAAGGCCCTAGGTAGCTA
TCACTCTCAAGTTGGAATGACTCCCACACAGATTAATTCTAAAATTCTTC
CCTCTCTCCCTCCCTCTCTCCCTTCCTCCCTTTCCCTCCCATCCTCTTTC
TTTCCTTTTCTTTTGTTTACTTTCTTTTCTTTTCTTTTTTTTTTTTTTTT
TTTGGCCTTTCTTCTTCCCCTGTTTCCCAGGGACTCCTTGGCTGGGCCCA
GAAAGACCTGCAGAGTGAATTTGGGGTTGCCACAGACTCACACCACAGCA
GTTTTGGTTCTTCTAGCTGGTCTCAAGACACTTCTCAGAACTATAGCCTC
GGGGGCAGGAGCCCCGTTGGAGACACAGGTCTTGGGAAAAGAGACTGGAG
CAGCAAGTGTGGGCAAGGGTCCCGGGAGGGGAGCACTAGGGAGTGGGCCA
GCAGACACAGCCTTGGCCAAGAAGTGAATGGAATCCGTGGCAGCCCAGAA
CCAGAGCGAAATGCCTGTCCCTGAACGGGCAAGGGGAAAGCCGGCCCAAC
TTTGGTGCTCAAGGGCTGTAGGCTGATGCCCAANCAATGGGAATTCCGGA
AGAAGGAAGTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no522_h22.g1 MSMg01no522_h22.g1 CHROMAT_FILE:
MSMg01no522_h22.g1 PHD_FILE: MSMg01no522_h22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:06 2005
         (407 letters)



>mm_chr2_84901553_84902359
          Length = 807

 Score =  702 bits (363), Expect = 0.0
 Identities = 393/411 (95%), Gaps = 16/411 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctgtttaagaatgaggatccttaggcccagagtagttaagtgatttgctcaaggtcaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctgtttaagaatgaggatccttaggcccagagtagttaagtgatttgctcaaggtcaca 260

                                                                       
Query: 61  cagctgaaatcctggcagcggtcttctgctaaagtggggctctaaggccctaggtagcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagctgaaatcctggcagcggtcttctgctaaagtggggctctaaggccctaggtagcta 320

                                                                       
Query: 121 tcactctcaagttggaatgactcccacacagattaattctaaaattcttccctctctccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcactctcaagttggaatgactcccacacagattaattctaaaattcttccctctctccc 380

                                                                       
Query: 181 tccctctctcccttcctccctttccctcccatcctctttctttccttttcttttgtttac 240
           |            |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 t------------tcctccctttccctcccatcctctttctttccttttcttttgtttac 428

                                                                       
Query: 241 tttcttttcttttctttt-tttt-tttttt--tttttggcctttcttcttcccctgtttc 296
           |||||||||||||||||| |||| ||||||  |||||| | |||||||||||||||||||
Sbjct: 429 tttcttttcttttcttttcttttattttttcttttttgtcttttcttcttcccctgtttc 488

                                                                       
Query: 297 ccagggactccttggctgggcccagaaagacctgcagagtgaatttggggttgccacaga 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ccagggactccttggctgggcccagaaagacctgcagagtgaatttggggttgccacaga 548

                                                              
Query: 357 ctcacaccacagcagttttggttcttctagctggtctcaagacacttctca 407
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ctcacaccacagcagttttggttcttctagctggtctcaagacacttctca 599


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 807
Length adjustment: 9
Effective length of query: 398
Effective length of database: 798
Effective search space:   317604
Effective search space used:   317604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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