BAC Information

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BAC

Clone NameMSMg01-522I21
Chromosome2 (Build37)
Map Location 130,611,024 - 130,748,003
singlet/doubletdoublet
Overlap gene4930402H24Rik, LOC100043766, C030014O09Rik, LOC627316, Atrn
Upstream geneStk35, Tgm3, AU015228, LOC100043438, Tgm6, Snrpb, Tmc2, Nol5a, Idh3b, Ebf4, LOC668899, Cpxm1, LOC100043446, 1700020A23Rik, 4933425O20Rik, A930025D01Rik, Vps16, Ptpra, Mrps26, Oxt, Avp, 1700012O15Rik, Ubox5, Fastkd5, Prosapip1, 2600009E05Rik, Itpa, Slc4a11
Downstream geneLOC100043768, Gfra4, Adam33, Siglec1, LOC100043457, Hspa12b, 1700037H04Rik, Spef1, Cenpb, Cdc25b, 2310035K24Rik, D430028G21Rik, Pank2, Rnf24, LOC100043463, Smox, Adra1d, Lamr1-ps1, Prnp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-522I21.T7 (MSMg01no522_i21.b1)MSMg01-522I21.TJ (MSMg01no522_i21.g1)
ACCAG593084AG593085
length769786
length of high quality
(start - end)		624 (50 - 673)501 (85 - 585)
definitionCHROMAT_FILE: MSMg01no522_i21.b1 PHD_FILE: MSMg01no522_i21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:11 2005CHROMAT_FILE: MSMg01no522_i21.g1 PHD_FILE: MSMg01no522_i21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,611,024 - 130,611,643)(130,747,503 - 130,748,003)
sequence
NNNGGACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTGTGAGGAATCAGTTAAACAAATTGATTCTATAGTTGCAAT
CAGGGAAGGATAAATGCCTACAAGATGGAATTTTGCATAAAATAGTAAAT
TGTATAATAATGTCTCTTTCATAGGAAAAACCATTAGGTAATAGCTGGTA
AGATAACTATTCATAGAGACTTACCCAAATAAGGAACATGAGTAGCTCCA
AAAAAGTATGTTCTTGAACAGGCCAGAGGTCCCTTTGGTGAGACACACTG
AGCGACCTGAACGTTGTGGGGAGAAGAAAGAAAGATGAGTGCACTAGGAG
CTGGTGAGCTGGCTCACAGGCCTGGCCATCTAAACTCAGTCCCCAGAAAC
CATGGAAAGATGCAAGGAGGAAACAGACTTCACCAGATTGTCCTCAGGCC
TCCACTCATCTGCCATGGCACACACACACCCTGCTTCATGAACATTTGCA
CAATAATCAGACTCTTAAAACGGAGCACACGTAGACAAGTGATGCTGAAG
ACATGAAAGCAAACAGTTAATGCAACGACGTTTACTTAACTGAACCTGAT
TTACTTATTTTCTTTTTTCTTCCAGACAGGGTTTCTCTGTGTAGCCCTGG
CTGTCCTGGAACGCACTCTGTAGACCAGGCTGGGCTCGAACTCAGAAATC
TGCCTCCTGGGATTAAGGTGTGTGTCACCACTGCCCAGTCTAATTTATTT
TATAGACCAAGATGACTTN

NNTTTGGACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAGAATTGCATTACA
AGTGGACAATTGGAATGTGAAAAAGGAAAGATCTCTACAAGGTTGGTACA
ACAAGAGAACTCAAAAACATAAGACAAAAAGCATAAACACCACAGGAAAA
TTCGCAATTAAGAGTTGAACTTTCTGTCTGTATATTTAGCTGTTATAGAA
TACATTCTTGGTATGTATGATGCTCTAGATTTAATTCCCAGCATCACAGA
AAAGCAAAAGATGTCATAAAATTTAAGACAAAACTTCATTGATGCTAGTA
ACAAACCTGGGACAATCTCTGTGCAGGAAGCTATTAGCAATATGAGGCAA
AATTTTACATCCATCAATCCTCTGGTACAGCAATTTCACGTCTGAGACCT
TATTCCTAAAGGTAGACCCACAAATACATAAAATGATGTTTGCACTTTTA
AACAAGATTTGTTTTGCTTTGTTTTAAGAAAGGGTCTCAAACCTAGTGTG
CTTGAGTACAAACCGTTAATCCCAACACTCCATAGGCAGAGAGGCAGGGG
ATCTCTAGGACCACACTGGTCTGCATAGCAAGTTTCAGGCCAGCCAAGGA
TATGTACTGAGATCCCATTTCAAAGGAAAAGAGAAANGCAGGCAAANTAA
GGAAGGAGGCAGGGAAGGGGAATGAGAGATGGCTCTTTGGGGTTAGAGAG
ATGGTTCAATGGTTAGAAGTCTTGCTATGTAATCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no522_i21.b1 MSMg01no522_i21.b1 CHROMAT_FILE:
MSMg01no522_i21.b1 PHD_FILE: MSMg01no522_i21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:11 2005
         (624 letters)



>mm_chr2_130610820_130611843
          Length = 1024

 Score = 1176 bits (608), Expect = 0.0
 Identities = 617/620 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgtgaggaatcagttaaacaaattgattctatagttgcaatcagggaaggataa 64
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 205 gaattctgtgaggaatgagttaaacaaattgattctatagttgcaatcagggaaagataa 264

                                                                       
Query: 65  atgcctacaagatggaattttgcataaaatagtaaattgtataataatgtctctttcata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgcctacaagatggaattttgcataaaatagtaaattgtataataatgtctctttcata 324

                                                                       
Query: 125 ggaaaaaccattaggtaatagctggtaagataactattcatagagacttacccaaataag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggaaaaaccattaggtaatagctggtaagataactattcatagagacttacccaaataag 384

                                                                       
Query: 185 gaacatgagtagctccaaaaaagtatgttcttgaacaggccagaggtccctttggtgaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaacatgagtagctccaaaaaagtatgttcttgaacaggccagaggtccctttggtgaga 444

                                                                       
Query: 245 cacactgagcgacctgaacgttgtggggagaagaaagaaagatgagtgcactaggagctg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cacactgagcgacctgaacgttgtggggagaagaaagaaagatgagtgcactaggagctg 504

                                                                       
Query: 305 gtgagctggctcacaggcctggccatctaaactcagtccccagaaaccatggaaagatgc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtgagctggctcacaggcctggccatctaaactcagtccccagaaaccatggaaagatgc 564

                                                                       
Query: 365 aaggaggaaacagacttcaccagattgtcctcaggcctccactcatctgccatggcacac 424
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 565 aaggaggaaacagacttcaccagattgtcctcagacctccactcatctgccatggcacac 624

                                                                       
Query: 425 acacaccctgcttcatgaacatttgcacaataatcagactcttaaaacggagcacacgta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acacaccctgcttcatgaacatttgcacaataatcagactcttaaaacggagcacacgta 684

                                                                       
Query: 485 gacaagtgatgctgaagacatgaaagcaaacagttaatgcaacgacgtttacttaactga 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gacaagtgatgctgaagacatgaaagcaaacagttaatgcaacgacgtttacttaactga 744

                                                                       
Query: 545 acctgatttacttattttcttttttcttccagacagggtttctctgtgtagccctggctg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 acctgatttacttattttcttttttcttccagacagggtttctctgtgtagccctggctg 804

                               
Query: 605 tcctggaacgcactctgtag 624
           ||||||||||||||||||||
Sbjct: 805 tcctggaacgcactctgtag 824


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space:   622596
Effective search space used:   622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no522_i21.g1 MSMg01no522_i21.g1 CHROMAT_FILE:
MSMg01no522_i21.g1 PHD_FILE: MSMg01no522_i21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:11 2005
         (501 letters)



>mm_chr2_130747303_130748203
          Length = 901

 Score =  969 bits (501), Expect = 0.0
 Identities = 501/501 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atagaattgcattacaagtggacaattggaatgtgaaaaaggaaagatctctacaaggtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 atagaattgcattacaagtggacaattggaatgtgaaaaaggaaagatctctacaaggtt 642

                                                                       
Query: 61  ggtacaacaagagaactcaaaaacataagacaaaaagcataaacaccacaggaaaattcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 ggtacaacaagagaactcaaaaacataagacaaaaagcataaacaccacaggaaaattcg 582

                                                                       
Query: 121 caattaagagttgaactttctgtctgtatatttagctgttatagaatacattcttggtat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 caattaagagttgaactttctgtctgtatatttagctgttatagaatacattcttggtat 522

                                                                       
Query: 181 gtatgatgctctagatttaattcccagcatcacagaaaagcaaaagatgtcataaaattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gtatgatgctctagatttaattcccagcatcacagaaaagcaaaagatgtcataaaattt 462

                                                                       
Query: 241 aagacaaaacttcattgatgctagtaacaaacctgggacaatctctgtgcaggaagctat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 aagacaaaacttcattgatgctagtaacaaacctgggacaatctctgtgcaggaagctat 402

                                                                       
Query: 301 tagcaatatgaggcaaaattttacatccatcaatcctctggtacagcaatttcacgtctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tagcaatatgaggcaaaattttacatccatcaatcctctggtacagcaatttcacgtctg 342

                                                                       
Query: 361 agaccttattcctaaaggtagacccacaaatacataaaatgatgtttgcacttttaaaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 agaccttattcctaaaggtagacccacaaatacataaaatgatgtttgcacttttaaaca 282

                                                                       
Query: 421 agatttgttttgctttgttttaagaaagggtctcaaacctagtgtgcttgagtacaaacc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 agatttgttttgctttgttttaagaaagggtctcaaacctagtgtgcttgagtacaaacc 222

                                
Query: 481 gttaatcccaacactccatag 501
           |||||||||||||||||||||
Sbjct: 221 gttaatcccaacactccatag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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