Query= MSMg01no522_m05.b1 MSMg01no522_m05.b1 CHROMAT_FILE:
MSMg01no522_m05.b1 PHD_FILE: MSMg01no522_m05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:27 2005
(628 letters)
>mm_chr2_142203386_142204413
Length = 1028
Score = 1176 bits (608), Expect = 0.0
Identities = 620/624 (99%)
Strand = Plus / Plus
Query: 5 gaattcctttttctcttattttttttggaataacttctatgaagtgataagagttcttta 64
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctttttctcttattttttttagaataacttctatgaagtgataagagttcttta 264
Query: 65 aatgttgcctttactgaacaaaactcagaactactgacatcagtaacactaagtgggtaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatgttgcctttactgaacaaaactcagaactactgacatcagtaacactaagtgggtaa 324
Query: 125 tacagaaatttttgttattgatccaatctctcttcttgttattgatctttctatttcttt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tacagaaatttttgttattgatccaatctctcttcttgttattgatctttctatttcttt 384
Query: 185 atgactcagtcttgagaatgtgtaggcatttgacatatagttgttatatcaccagtcacg 244
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct: 385 atgactcagtcttgagaatgtgtaggcatttggcatatagttgttatatcaccagtcatg 444
Query: 245 atcttttgggtttatcagttatattgcctccctttaaatctgattttattattctctttc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atcttttgggtttatcagttatattgcctccctttaaatctgattttattattctctttc 504
Query: 305 cttaagttagctgaaggttcattattttatccttctaaagaagtttttgatgtttgcatt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cttaagttagctgaaggttcattattttatccttctaaagaagtttttgatgtttgcatt 564
Query: 365 gtttgattatctttttattagtgttggtttggtatgatgttgttttctagatccttgata 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtttgattatctttttattagtgttggtttggtatgatgttgttttctagatccttgata 624
Query: 425 ttcatggacaggttgtttgcaatatttccaatttcctcttataattgaattaattcctac 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttcatggacaggttgtttgcaatatttccaatttcctcttataattgaattaattcctac 684
Query: 485 aaacttcccttttaattttatggcgattgcatctgctaggttttagtatgttatatacat 544
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 685 aaacttcccttttaattttatggcgatcgcatctgctaggttttagtatgttatatacat 744
Query: 545 tttatttgttttagagtacttcaatgaccaattttatttctacatccacagatcattaac 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tttatttgttttagagtacttcaatgaccaattttatttctacatccacagatcattaac 804
Query: 605 aatataatttacatccaaaaatgt 628
||||||||||||||||||||||||
Sbjct: 805 aatataatttacatccaaaaatgt 828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space: 629124
Effective search space used: 629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no522_m05.g1 MSMg01no522_m05.g1 CHROMAT_FILE:
MSMg01no522_m05.g1 PHD_FILE: MSMg01no522_m05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:27 2005
(630 letters)
>mm_chr2_142255842_142256871
Length = 1030
Score = 849 bits (439), Expect = 0.0
Identities = 494/527 (93%), Gaps = 26/527 (4%)
Strand = Plus / Minus
Query: 1 agtgaaatgatgcatagaaagtagttattcagatgcctttgaagggctcagtggatccga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 agtgaaatgatgcatagaaagtagttattcagatgcctttgaagggctcagtggatccga 468
Query: 61 gccgttattattgtcgttacaggcaagaaagggccgatcatgttgtgatgcctcttttcc 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 gctgttattattgtcgttacaggcaagaaagggccgatcatgttgtgatgcctcttttcc 408
Query: 121 gttaggttaattttagctcaaacacataggacgctttggtctactaaggggaagaagaac 180
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 407 gttaggttaattttagctcaaacacataggacactttggtctactgaggggaagaagaac 348
Query: 181 acacagagctaaacacaggagctgcctgactgattactgtaggatgtgctttggtcatga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 acacagagctaaacacaggagctgcctgactgattactgtaggatgtgctttggtcatga 288
Query: 241 gcccttaggagggctgttagagaaagtcaatttttgtgtttgtgttctgactcttctggt 300
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 gcccttaggagggctgttcgagaaagtcaatttttgtgtttgtgttctgactcttctggt 228
Query: 301 agtgtgtacagctctttgtctagaaagaagaaaagaaaagaagagaaaggaaaagaaaag 360
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 227 agtgtgtacagctctttgtctagaaagaagaaaagaaaagaaaagaaaagaaaagaaaag 168
Query: 361 aa--ga-------------gaagaaaaaaagaaacaagaacattcaaactaattgttttc 405
|| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 aaaagaaaagaaaagaaaagaagaaaaaaagaaacaagaacattcaaactaattgttttc 108
Query: 406 agaatttcacttttctacttagttgaaggccaaactctagagccat-------acccttc 458
|||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 107 agaatttcacttttctacttagttgaaggccaaactctagagccatggttttcacccttc 48
Query: 459 ----tgctgtgaccctttaatacagttcttcacatcatggcaaccct 501
|||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 47 caaatgctgtgaccctttaatacagttcttcatatcatggcaaccct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space: 632400
Effective search space used: 632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
