BAC Information

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BAC

Clone NameMSMg01-523A20
Chromosome2 (Build37)
Map Location 85,176,247 - 85,176,921
singlet/doubletsinglet
Overlap genenone
Upstream geneCalcrl, Tfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524
Downstream geneOlfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-523A20.T7 (MSMg01no523_a20.b1)MSMg01-523A20.TJ (MSMg01no523_a20.g1)
ACCAG593465AG593466
length778760
length of high quality
(start - end)		689 (36 - 724)519 (67 - 585)
definitionCHROMAT_FILE: MSMg01no523_a20.b1 PHD_FILE: MSMg01no523_a20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:50 2005CHROMAT_FILE: MSMg01no523_a20.g1 PHD_FILE: MSMg01no523_a20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGTAATTTGGCGGCGCGTAACGAATCACTATTCCGAGAGGATCCGCGGAA
TTCAGAACTTACTTGTGATTAAGAATGTCACACTGTAAACATTACAACTC
ATATTAACTTACTAATTCAATATAATTTCTATCAAATTCTAGATAGAATT
ATTTTAAAGTATACTTCAACAAGCCTATTCTAAATTTTATATGGAAAAGA
GGCAAGAGAGAATTTTAAATGGAAACAAGGTAGAAACTTGTTCTACCAGA
CTTTAAGTGTTCTCATAAAACAGTTATAATAAAGATAGTCTGATACAGGG
GACAAGGCAGACTATTATATTAATAGAACTTGGAACATGAAATGCTAAGC
AGACCTATTAGTCTGCAGAAAGCTGACATATGAAAACTGGGCACTTAGGT
CTATGAAAAATGATATATGTGGTGCTGTGACTACCTATATGTACACAAAA
ATTATATTAGTTCCTGCTTTGCATTTTACAAAAGCAACTAAAGATAAAAT
ATTTAGGTTTTAAAGCTTTGATAGTAAAATAGAGCAGAACAAATATGACT
CATATATATATAGACAAAATTTAAAGGAGGCAAAAAATTACAAGCAAAAA
ACATTGTAAATAGTATCAAAGGACAAGATACCTACTGGAGATTGTTTGTG
ACATACTTAAATGTCAAAGGAGTAGAAGCCAGTATATAGAAATGATTTCT
AAAAGTGAATTTTAAGGAAAACATTCTCAAGTGACATAAAGCAGAAAATT
ATTATAAAGAAACCCTAAATGATAAATA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTGATCTCTCCAATACTTTTAACATGAATTGGTG
TTGTATTTTGTCAAAGGCTTTTTCTGAATCTAATGAGATGATCATGTGCT
TTTTTTCCCTTTGAGTTTGTTTATATATTGGGTTATATTAATGGATTTCC
GTATATTAAACCATATCTGCATCCTTAGAATGAAGCCTACTTGATCACGG
TGGATGATCGTTTTGATGTGCAGTTGGATTTGGTTTGTGAGAATTTTATT
GAGTATTTTTGCATCCATACTCATAAGGGAAATTAATCTAAAGTTCTCTT
TCTTTGTTGGGTCTTTTTGCAGTTTAGGTATCAGTGTAACTGTGGTTTCA
TAGAAAGAATTAGGTAGTGTTCCTTCTGTTCTTATTTTGTGAAATAGTTT
GAAGAGCATTGGTATTAGATCTTCTTTGGAGGTCTAATAGAATTCTGCAC
TAAAACCATCTGGTCCTCCTGGACATTTTCGGCTGGGAGACTTTTAATGA
CTTCTTCTACTTCTTTAGGGGTTATGGGACTGTTTAGAAGGGTTATCTGG
TCCTGAGTTAACTTTGGGATCTGGGATTTGTCTAGAAAATCATCCATTTC
ATTCACGGTTTCTAGTTTGGTTGAATATAAACTTTTATAACAGAATCTGA
TTATTTTTTAATTTCAGTTTCTGGTGTTATGTCCACCTTTTCATTCCTGA
ATTTGTTAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no523_a20.b1 MSMg01no523_a20.b1 CHROMAT_FILE:
MSMg01no523_a20.b1 PHD_FILE: MSMg01no523_a20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:50 2005
         (689 letters)



>mm_chr2_85176035_85177121
          Length = 1087

 Score = 1236 bits (639), Expect = 0.0
 Identities = 667/677 (98%), Gaps = 2/677 (0%)
 Strand = Plus / Plus

                                                                       
Query: 13  gaattcagaacttacttgtgattaagaatgtcacactgtaaacattacaactcatattaa 72
           |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 gaattcagaactcagttgtgattaagaatgtcacactgtaaacattacaactcatattaa 272

                                                                       
Query: 73  cttactaattcaatataatttctatcaaattctagatagaattattttaaagtatacttc 132
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 cttactaattcaatataatttctatcaaattctagatagaattattttaaagtatacttc 332

                                                                       
Query: 133 aacaagcctattctaaattttatatggaaaagaggcaagagagaattttaaatggaaaca 192
           |||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 333 aacaagcctattctcaattttatatgaaaaagagtcaagagagaattttaaatggaaaca 392

                                                                       
Query: 193 aggtagaaacttgttctaccagactttaagtgttctcataaaacagttataataaagata 252
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 aggtagaaacttgttctaccagactttaagtgttctcataaaacagttataataaagata 452

                                                                       
Query: 253 gtctgatacaggggacaaggcagactattatattaatagaacttggaacatgaaatgcta 312
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 gtctgatacaggggacaaggcagactattatattaatagaacttggaacatgaaatgcta 512

                                                                       
Query: 313 agcagacctattagtctgcagaaagctgacatatgaaaactgggcacttaggtctatgaa 372
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 agcagacctattagtctgcagaaagctgacatatgaaaactgggcacttaggtctatgaa 572

                                                                       
Query: 373 aaatgatatatgtggtgctgtgactacctatatgtacacaaaaattatattagttcctgc 432
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 573 aaatgatatatgtggtgctgtaactacctatatgtacacaaaaattatattagttcctgc 632

                                                                       
Query: 433 tttgcattttacaaaagcaactaaagataaaatatttaggttttaaagctttgatagtaa 492
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 tttgcattttacaaaagcaactaaagataaaatatttaggttttaaagctttgatagtaa 692

                                                                       
Query: 493 aatagagcagaacaaatatgactcatatatatatagacaaaatttaaaggaggcaaaaaa 552
           |||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 693 aatacagcagaacaaatatgactcatatatata--gacaaaatttaaaggaggcaaaaaa 750

                                                                       
Query: 553 ttacaagcaaaaaacattgtaaatagtatcaaaggacaagatacctactggagattgttt 612
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 751 ttacaagcaaaaaacattgtaaatagtatcaaaggacaggatacctactggagattgttt 810

                                                                       
Query: 613 gtgacatacttaaatgtcaaaggagtagaagccagtatatagaaatgatttctaaaagtg 672
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 gtgacatacttaaatgtcaaaggagtagaagccagtatatagaaatgatttctaaaagtg 870

                            
Query: 673 aattttaaggaaaacat 689
           |||||||||||||||||
Sbjct: 871 aattttaaggaaaacat 887


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1087
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1077
Effective search space:   731283
Effective search space used:   731283
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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