BAC Information

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BAC

Clone NameMSMg01-523E16
Chromosome2 (Build37)
Map Location 19,200,669 - 19,374,987
singlet/doubletdoublet
Overlap geneArmc3, Msrb2, LOC100041196, Ptf1a, LOC100041534
Upstream geneDnajc1, LOC623325, LOC625815, Commd3, Bmi1, EG667477, LOC100041448, BC061194, LOC667493, LOC100041479, Pip5k2a, 4930426L09Rik, LOC667521
Downstream gene4921504E06Rik, LOC100041244, Otud1, LOC667564, LOC100041302, LOC433406, LOC654360, LOC667609, Etl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-523E16.T7 (MSMg01no523_e16.b1)MSMg01-523E16.TJ (MSMg01no523_e16.g1)
ACCAG593646AG593647
length755695
length of high quality
(start - end)
647 (74 - 720)291 (8 - 298)
definitionCHROMAT_FILE: MSMg01no523_e16.b1 PHD_FILE: MSMg01no523_e16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:09 2005CHROMAT_FILE: MSMg01no523_e16.g1 PHD_FILE: MSMg01no523_e16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,200,669 - 19,201,315)(19,374,707 - 19,374,987)
sequence
NCCTATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATCTTGTACCTTAGGGTCCTTTGGTAATCTTGTAACTACTTTCC
CTCAATTCCTTCTGTGTTGATTCTGTGTAAGGCGCGGCTCCAGCTGTAGA
TAGAGATGGAGCAGGGGCAAAGTCCCTGGGGACATGCATTCCTCCAGCCT
GAGCAACACAAAACTATTATATTTTAGTTTTGAGACAGGGTATGGCCAGT
AGCCCAGGCTATCCCAGTCCTCCTGTGTCAGCCTCCCACATATCAGTATT
ACAAGTGAGCACCCCTCAGTCATCTCAAAAGATAATTTTCAAAAGTGACA
GATACATAAGTGGAACAAAATATCACAGGGTGATAAAGAGGATCATGACC
TTAGGGTCGGTCTTAGGAGAGGCCCCAGGGACCTGCGCTGGAGCTAATTG
AGGGATGGGGACATAGCTGGGGATTGAAATTTTTTAGTCACACTAGAGCA
TTCAGTGTCCTTAGTAACATGAAATTATATCTTTAATTACTGTGGAATCC
TATTCCATGTCATTTATAGATATTACAGACCGATTTCCAGGCTATCCAGC
AGCATTTGCTAACTGCAGAATCATTTATTCTGAGCATCCAGACACTTTGA
GCAGCATCCCTATTTTATTCGGAGACAAGTCGACCATGTGAAATGAGGAG
AGCTATTCTCTCCCCTTGCCCGGTAGTTCATTACTACCCACTATTTACTC
AGGGG
TTCCGCGGAATTCCCCCCCCCCCAAGCGTCGGTCTTTCTAGGACAGGAGC
TCATAAAGAGCTAGCTTTCTTTTCTCAGAGCTTATACACCAAAGGTTTCT
ATCTGGTTGCAGAGGGTTGAGGGAAGCGAGCTGGGGGAGTGAAAGGGTGA
ATTAGTTGTGGTATCCCTCTAATCCGGATCTTTGTCTAATCTTGCTACCT
AACATACAAAGAATTACATGAGGAGACCCTAGAGGAGGCAAGGTACAAGG
GTGCCCAGGTGCCTTGAATTGTTGGGACAAGGACAGGGTGAATGAAGCAC
GCCAAGTATCACTGGAGGAGGAGAGGGGTGCCTCTCATTAAGAGAGAACC
TTAAATCCTGTCCTGGAAGCCCGGACAAGCAACACAATCTGCTTCTCTCA
AGTAAAGTGGCAGTGGCTTTCCAAAGCAACGCCAGCGCAAAAAGTTGTTT
GGAACAGATGTGGACACTCCAGGAAACCTGCTGACATTTAATTTGAGAGG
ATTTTTCTGAGGTCTAACCTCTCTGGGAAGTGTCCGTATATTCCACAGAG
CCCGAATATGGGACCATCTATTAAGGTGTGCCCCCACCACTGTGGGCCCT
TTTGCGGGCGGTCCTGCCCCCCATCTATAATTTGCCTCCCCAAATACTGT
GTTTTCTGGCCATCTTTTTGTTAATCTTATGTTATTGCCCGCAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no523_e16.b1 MSMg01no523_e16.b1 CHROMAT_FILE:
MSMg01no523_e16.b1 PHD_FILE: MSMg01no523_e16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:09 2005
         (647 letters)



>mm_chr2_19200469_19201515
          Length = 1047

 Score = 1236 bits (639), Expect = 0.0
 Identities = 645/647 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctttggtaatcttgtaactactttccctcaattccttctgtgttgattctgtgtaaggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctttggtaatcttgtaactactttccctcaattccttctgtgttgattctgtgtaaggc 260

                                                                       
Query: 61  gcggctccagctgtagatagagatggagcaggggcaaagtccctggggacatgcattcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcggctccagctgtagatagagatggagcaggggcaaagtccctggggacatgcattcct 320

                                                                       
Query: 121 ccagcctgagcaacacaaaactattatattttagttttgagacagggtatggccagtagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccagcctgagcaacacaaaactattatattttagttttgagacagggtatggccagtagc 380

                                                                       
Query: 181 ccaggctatcccagtcctcctgtgtcagcctcccacatatcagtattacaagtgagcacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaggctatcccagtcctcctgtgtcagcctcccacatatcagtattacaagtgagcacc 440

                                                                       
Query: 241 cctcagtcatctcaaaagataattttcaaaagtgacagatacataagtggaacaaaatat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctcagtcatctcaaaagataattttcaaaagtgacagatacataagtggaacaaaatat 500

                                                                       
Query: 301 cacagggtgataaagaggatcatgaccttagggtcggtcttaggagaggccccagggacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacagggtgataaagaggatcatgaccttagggtcggtcttaggagaggccccagggacc 560

                                                                       
Query: 361 tgcgctggagctaattgagggatggggacatagctggggattgaaattttttagtcacac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgcgctggagctaattgagggatggggacatagctggggattgaaattttttagtcacac 620

                                                                       
Query: 421 tagagcattcagtgtccttagtaacatgaaattatatctttaattactgtggaatcctat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagagcattcagtgtccttagtaacatgaaattatatctttaattactgtggaatcctat 680

                                                                       
Query: 481 tccatgtcatttatagatattacagaccgatttccaggctatccagcagcatttgctaac 540
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tccatgccatttatagatattacagaccgatttccaggctatccagcagcatttgctaac 740

                                                                       
Query: 541 tgcagaatcatttattctgagcatccagacactttgagcagcatccctattttattcgga 600
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 741 tgcagaatcatttattctgagcatccaaacactttgagcagcatccctattttattcgga 800

                                                          
Query: 601 gacaagtcgaccatgtgaaatgaggagagctattctctccccttgcc 647
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gacaagtcgaccatgtgaaatgaggagagctattctctccccttgcc 847


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space:   660569
Effective search space used:   660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no523_e16.g1 MSMg01no523_e16.g1 CHROMAT_FILE:
MSMg01no523_e16.g1 PHD_FILE: MSMg01no523_e16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:09 2005
         (291 letters)



>mm_chr2_19374497_19375187
          Length = 691

 Score =  543 bits (281), Expect = e-159
 Identities = 281/281 (100%)
 Strand = Plus / Minus

                                                                       
Query: 11  ccccccaagcgtcggtctttctaggacaggagctcataaagagctagctttcttttctca 70
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ccccccaagcgtcggtctttctaggacaggagctcataaagagctagctttcttttctca 432

                                                                       
Query: 71  gagcttatacaccaaaggtttctatctggttgcagagggttgagggaagcgagctggggg 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gagcttatacaccaaaggtttctatctggttgcagagggttgagggaagcgagctggggg 372

                                                                       
Query: 131 agtgaaagggtgaattagttgtggtatccctctaatccggatctttgtctaatcttgcta 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 agtgaaagggtgaattagttgtggtatccctctaatccggatctttgtctaatcttgcta 312

                                                                       
Query: 191 cctaacatacaaagaattacatgaggagaccctagaggaggcaaggtacaagggtgccca 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 cctaacatacaaagaattacatgaggagaccctagaggaggcaaggtacaagggtgccca 252

                                                    
Query: 251 ggtgccttgaattgttgggacaaggacagggtgaatgaagc 291
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ggtgccttgaattgttgggacaaggacagggtgaatgaagc 211


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)