NNNNNNNTTCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCATTGCAGGTGTGTTCTTTCCAGGGGTAGGCCAAACAA
AATCCTATGTGAACATCCAAGGTGGAAAGGAGTCAAGGAAGCAGGTTGAT
GGCCAAGTCAGGCCGTGTTATAGGACGGAGAAGAGTGGCATGACATAATG
ATGCTGTCATGAAGGGAGGATGCTAGCAGGGTGGGTAAATGCTTTCCAAG
GTACTCACAACATGCAGCTTGCCACTGGGGAAAAATGCTGCACTTTACTG
GGATTCTGCAGTACTGCCGAGTCAGGTCTGGTAGCTATGGGAGAAGACAC
TAAGAGCAGGCCCTGGAAGCCTCTGTGGAAATGGGAACTTGTATAGCACA
TGAATCTCTGCCATTGGTTTCAAGCCTCCTAGGACCACAGAAAGATGACC
CTTAGTCTCTGCTGAGGACAGTCTGAGGTCACTGTTCAGCTGACAAGGGT
GAGCTTAAAATGACCACTTCTTATTGCTTTTTTTGTAGGAAGAGATTAGA
GTTGCTTAGAACAGACTACCAAACTACCAAGCCTCTCAGAAGCAGACTCA
GGGTTCAGCCACCACTGAAGAACCGGGGGGGCTGGAATGGGGACAGGTGG
AATTTACTGCTTCTCAGACCTTGTGCTAAGAACCTTAGATATGATAACTT
GTGTAATCTTCATAGTTGCCCAGTGGTTGAAGGACCT

NNNNNNTTCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACCTCTTTTCTAGTCC
AAAGTCTTCCATATTCCTCCAAACAACAGCAGCATGGTCAGGCCTATCAA
AGCAATACCCAACTCTTGGTACCAACCTCTGTCTTAGTTACTGTTCTATT
GCTACAAGGAGACACCGTGACCCATGCAACCCTTATAAAAGAAAGCATTT
AATTGGGGGGCTGTTTACAGTATTAGAGGGTTTGTCTGCTATCATCATGG
TGAGATCTGCAGGGAGCAGGCAGAGAGAGTCTGGTGTTGGCATGGGTTTT
GAAACCTCAAGGCCAACTTCCAATGATACATCTTCTCCAACAAGGCCACA
CCTCCTAATTTTTCTGAAAGTTCTACTAACTGGAGATGAAACATTCAAAC
ATATGAAGCAACAGGAACCTTTCTCATTCAAACCACCACAGATACTTACT
CATCTATGTTCTTGGATACTCTGTTCATAATAGTCGAAAATTAGAAACAG
CCTTGATATCCATCAACTAATGAACAGATAATGAAAATGTGCTAATTTAT
ACGATGAAATAGTATTCACTGTTTAAGAAAACTAGCTTATGAAATTTGCT
GGTAAATGGATTGAAATAAAAAACAGACAAAAGCATCCTGAGTGAGATAA
CTCAGACTCAAGAANGCAAACACTGAATGTTTTCACTTCCN

Query= MSMg01no523_f03.b1 MSMg01no523_f03.b1 CHROMAT_FILE:
MSMg01no523_f03.b1 PHD_FILE: MSMg01no523_f03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:11 2005
         (545 letters)



>mm_chr2_140587250_140588194
          Length = 945

 Score = 1031 bits (533), Expect = 0.0
 Identities = 539/541 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccattgcaggtgtgttctttccaggggtaggccaaacaaaatcctatgtgaacat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gaattccattgcaggtgtgttctttccaggggtaggccaaacaaaatcctatgtgaacat 686

                                                                       
Query: 65  ccaaggtggaaaggagtcaaggaagcaggttgatggccaagtcaggccgtgttataggac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ccaaggtggaaaggagtcaaggaagcaggttgatggccaagtcaggccgtgttataggac 626

                                                                       
Query: 125 ggagaagagtggcatgacataatgatgctgtcatgaagggaggatgctagcagggtgggt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggagaagagtggcatgacataatgatgctgtcatgaagggaggatgctagcagggtgggt 566

                                                                       
Query: 185 aaatgctttccaaggtactcacaacatgcagcttgccactggggaaaaatgctgcacttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaatgctttccaaggtactcacaacatgcagcttgccactggggaaaaatgctgcacttt 506

                                                                       
Query: 245 actgggattctgcagtactgccgagtcaggtctggtagctatgggagaagacactaagag 304
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 actgggattctgcaggactgccgagtcaggtctggtagctatgggagaagacactaagag 446

                                                                       
Query: 305 caggccctggaagcctctgtggaaatgggaacttgtatagcacatgaatctctgccattg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caggccctggaagcctctgtggaaatgggaacttgtatagcacatgaatctctgccattg 386

                                                                       
Query: 365 gtttcaagcctcctaggaccacagaaagatgacccttagtctctgctgaggacagtctga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtttcaagcctcctaggaccacagaaagatgacccttagtctctgctgaggacagtctga 326

                                                                       
Query: 425 ggtcactgttcagctgacaagggtgagcttaaaatgaccacttcttattgctttttttgt 484
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggtcactgtttagctgacaagggtgagcttaaaatgaccacttcttattgctttttttgt 266

                                                                       
Query: 485 aggaagagattagagttgcttagaacagactaccaaactaccaagcctctcagaagcaga 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aggaagagattagagttgcttagaacagactaccaaactaccaagcctctcagaagcaga 206

            
Query: 545 c 545
           |
Sbjct: 205 c 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space:   500225
Effective search space used:   500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)