BAC Information

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BAC

Clone NameMSMg01-523F20
Chromosome2 (Build37)
Map Location 51,925,042 - 52,115,190
singlet/doubletdoublet
Overlap geneRif1, Neb
Upstream geneRnd3, LOC666802, LOC666810, LOC100041614, Tas2r134, LOC433426, Ppia-ps2_635.1, Rbm43, LOC100041634, Nmi, Tnfaip6
Downstream geneLOC100041670, Arl5a, Cacnb4, OTTMUSG00000012638, Stam2, Fmnl2, Prpf40a, Arl6ip6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-523F20.T7 (MSMg01no523_f20.b1)MSMg01-523F20.TJ (MSMg01no523_f20.g1)
ACCAG593701AG593702
length759754
length of high quality
(start - end)		645 (64 - 708)512 (74 - 585)
definitionCHROMAT_FILE: MSMg01no523_f20.b1 PHD_FILE: MSMg01no523_f20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:15 2005CHROMAT_FILE: MSMg01no523_f20.g1 PHD_FILE: MSMg01no523_f20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,114,546 - 52,115,190)(51,925,042 - 51,925,553)
sequence
TTTAAATTTTGGGCCGCTATACGACTCCTATTTCGAGAGGATCCGCGGAA
TTATAAGATAATAAGACTGAAATGCTTTCTCTATAGCAACTTCTAATGGA
ACACAACATTATCTGGAAAATACCACCAAAATGATAATTCATGTCTCTAT
CAGTTAACTTCGGTTGCATTTTCGAAAGTACTTGAGAATTTTGTGTGTTT
GGTAATCAGAGAGCTGTAAAAATGTAAAACAGGATCATTAGCAATTCATA
GACATAATATCCAATCACATAGGAGTGGTCTAGAGTATGGAGATTATTTT
CACAAACTCTTGAAGTATGCAGTACATTGGCTTAATTATTCTGCTTATTT
GTCATACTGTTTCTGAAGAACTGTTTTCCCAAAGTGATTGTCTCCACCTC
TCAACAGAAACTCTACAAAATGGGTTATGAAGAACTGAAGAAGAAAGGAT
ATGATCTTCCTGTGGACGCCATTCCAATCAAAGCAGCAAAAGCATCCCGG
GAGATTGCCAGTGAAGTAAGATGTTGTACATAGTGGTTTGGTTGCAATGA
GCATTAATTTTAAATGAGCAAACATCATATAAGGAGTCACAAATTAAAAC
AGGGTGACGATCCCAGACATACAGTGTGGGGTAAAAATAAGACCAAAAGT
CAATTTGACTGACTATTTGTGGCTGAATTTAGCCTTTAATCTTGCCTATC
AAAAAGCAGAAACATGTAGCTCTAGGGGCTTAGCAAGATATTTAGAATTA
GTAAATTTN

CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTAAGACCTGGCTGGCTTCAAAGTTA
TGTCAACCTATTTACCTCAGCTTTCTGAGTACTGGGATTAAAGGCGTATA
TATCTTCATGCCTGCTAGCTTTTAATGTGTCTGTGTATTTATGTAGGAGT
GGGTGTGTGTAGAGGCTAAGACACAAGAAGGGGTAAAATAGGCTTAGGGT
GTGTGGGGGAGATAGAAAGTGTATGATGTGAACACAGACGGGTGAAGACT
GGGGCAGGGTGAGGGGAGGATGCCGGCAGAGAGATACAGAGGAGGGAGTT
TGCTGGAGAAAGGGTGGGCCCAAACTAAAGACATAGAGAAAGCGGGAAGG
AACTTGCTACTTTGTAAGCTAGCAACTACAATTTACAAACTAAGCACAAC
AATAAGATAAATGATAACTTATAATAAAAACTTATACGATTATATAGTCA
ATCTTGCTCTGGGTCCATATTTTTGTTGTTTTAGAGGTGGAGTCTCCTGT
AGACCAAGTTGGCCTCAAACTGACTGTGTAGCTGAAGATGAATTCTTTTT
TTTAAAATTATTTATGTATATGAGTATACTATAGTTGTCTTTCAGACACA
CCTGAAGAGGGCATGGATCTCTTTACAGGTGGTTGTGAGCCCCCATGTGG
TTGCTGGGAATTGAACCACGACCTCTGGAAGAGGATCTATGCTCTTAACC
CTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no523_f20.b1 MSMg01no523_f20.b1 CHROMAT_FILE:
MSMg01no523_f20.b1 PHD_FILE: MSMg01no523_f20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:15 2005
         (645 letters)



>mm_chr2_52114346_52115390
          Length = 1045

 Score = 1239 bits (641), Expect = 0.0
 Identities = 644/645 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agactgaaatgctttctctatagcaacttctaatggaacacaacattatctggaaaatac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 agactgaaatgctttctctatagcaacttctaatggaacacaacattatctggaaaatac 786

                                                                       
Query: 61  caccaaaatgataattcatgtctctatcagttaacttcggttgcattttcgaaagtactt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 785 caccaaaatgataattcatgtctctatcagttaacttcggttgcattttctaaagtactt 726

                                                                       
Query: 121 gagaattttgtgtgtttggtaatcagagagctgtaaaaatgtaaaacaggatcattagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 gagaattttgtgtgtttggtaatcagagagctgtaaaaatgtaaaacaggatcattagca 666

                                                                       
Query: 181 attcatagacataatatccaatcacataggagtggtctagagtatggagattattttcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 attcatagacataatatccaatcacataggagtggtctagagtatggagattattttcac 606

                                                                       
Query: 241 aaactcttgaagtatgcagtacattggcttaattattctgcttatttgtcatactgtttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 aaactcttgaagtatgcagtacattggcttaattattctgcttatttgtcatactgtttc 546

                                                                       
Query: 301 tgaagaactgttttcccaaagtgattgtctccacctctcaacagaaactctacaaaatgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tgaagaactgttttcccaaagtgattgtctccacctctcaacagaaactctacaaaatgg 486

                                                                       
Query: 361 gttatgaagaactgaagaagaaaggatatgatcttcctgtggacgccattccaatcaaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 gttatgaagaactgaagaagaaaggatatgatcttcctgtggacgccattccaatcaaag 426

                                                                       
Query: 421 cagcaaaagcatcccgggagattgccagtgaagtaagatgttgtacatagtggtttggtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 cagcaaaagcatcccgggagattgccagtgaagtaagatgttgtacatagtggtttggtt 366

                                                                       
Query: 481 gcaatgagcattaattttaaatgagcaaacatcatataaggagtcacaaattaaaacagg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gcaatgagcattaattttaaatgagcaaacatcatataaggagtcacaaattaaaacagg 306

                                                                       
Query: 541 gtgacgatcccagacatacagtgtggggtaaaaataagaccaaaagtcaatttgactgac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gtgacgatcccagacatacagtgtggggtaaaaataagaccaaaagtcaatttgactgac 246

                                                        
Query: 601 tatttgtggctgaatttagcctttaatcttgcctatcaaaaagca 645
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tatttgtggctgaatttagcctttaatcttgcctatcaaaaagca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no523_f20.g1 MSMg01no523_f20.g1 CHROMAT_FILE:
MSMg01no523_f20.g1 PHD_FILE: MSMg01no523_f20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:15 2005
         (512 letters)



>mm_chr2_51924842_51925753
          Length = 912

 Score =  990 bits (512), Expect = 0.0
 Identities = 512/512 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   actaagacctggctggcttcaaagttatgtcaacctatttacctcagctttctgagtact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actaagacctggctggcttcaaagttatgtcaacctatttacctcagctttctgagtact 260

                                                                       
Query: 61  gggattaaaggcgtatatatcttcatgcctgctagcttttaatgtgtctgtgtatttatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggattaaaggcgtatatatcttcatgcctgctagcttttaatgtgtctgtgtatttatg 320

                                                                       
Query: 121 taggagtgggtgtgtgtagaggctaagacacaagaaggggtaaaataggcttagggtgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taggagtgggtgtgtgtagaggctaagacacaagaaggggtaaaataggcttagggtgtg 380

                                                                       
Query: 181 tgggggagatagaaagtgtatgatgtgaacacagacgggtgaagactggggcagggtgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgggggagatagaaagtgtatgatgtgaacacagacgggtgaagactggggcagggtgag 440

                                                                       
Query: 241 gggaggatgccggcagagagatacagaggagggagtttgctggagaaagggtgggcccaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggaggatgccggcagagagatacagaggagggagtttgctggagaaagggtgggcccaa 500

                                                                       
Query: 301 actaaagacatagagaaagcgggaaggaacttgctactttgtaagctagcaactacaatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actaaagacatagagaaagcgggaaggaacttgctactttgtaagctagcaactacaatt 560

                                                                       
Query: 361 tacaaactaagcacaacaataagataaatgataacttataataaaaacttatacgattat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tacaaactaagcacaacaataagataaatgataacttataataaaaacttatacgattat 620

                                                                       
Query: 421 atagtcaatcttgctctgggtccatatttttgttgttttagaggtggagtctcctgtaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atagtcaatcttgctctgggtccatatttttgttgttttagaggtggagtctcctgtaga 680

                                           
Query: 481 ccaagttggcctcaaactgactgtgtagctga 512
           ||||||||||||||||||||||||||||||||
Sbjct: 681 ccaagttggcctcaaactgactgtgtagctga 712


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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