BAC Information

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BAC

Clone NameMSMg01-525F09
Chromosome2 (Build37)
Map Location 120,829,265 - 120,999,479
singlet/doubletdoublet
Overlap geneTmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e
Upstream geneMapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39, Tmem87a, Ganc, Capn3, Zfp106, Snap23, Lrrc57, Cep27, Stard9, Cdan1, Ttbk2, Ubr1
Downstream geneTrp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76, Frmd5, Casc4, Mageb3, Ctdspl2, Eif3s1, 4930424G05Rik, B2m, Trim69
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-525F09.T7 (MSMg01no525_f09.b1)MSMg01-525F09.TJ (MSMg01no525_f09.g1)
ACCAG595197AG595198
length747749
length of high quality
(start - end)		621 (61 - 681)648 (67 - 714)
definitionCHROMAT_FILE: MSMg01no525_f09.b1 PHD_FILE: MSMg01no525_f09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:54 2005CHROMAT_FILE: MSMg01no525_f09.g1 PHD_FILE: MSMg01no525_f09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,829,265 - 120,829,885)(120,998,832 - 120,999,479)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCGGAATTATC
TAATTTCCCAAAGCTACTTAAATGAGGAACGAGTTTAATCATGCCTGAGG
TAGTCTATTTTACTAATTATTATACCTAATGCTTCATTTAGTCACTTATA
GAAGCAGAAAGTCAAATGTGCTAACAAATACCTGTAATCTCAGAGCCTGA
GAGGCAGAGGCAGATGGCTCTCTGTGAGTTCAAGGTCAACCTGGTCTACA
TAGTGAGTTCTAGGTGAGTCAGGGCTACACAGCACCCACATGGTGGCTCA
CAACCAGCTGTAACTCAATCCCAGGACATCTGATGCCATCTTCTGGTCTC
TAAGGGCACAACATGCATATGGCACAAAGACGTAATACAGGCAAGACATG
TCATAATACACATGAAAGTAAATAAAATCTCAAAAGAAATTTAAAAGAAA
ATATTAATGCGTTATATTAAAGTTATTACAACAGAATGTTAAAAATCTTG
AGTGTGATGGTGTTTTCAAAATTTATAAACCATATACCTATTTCAAGTAT
ATCATAAACTAAAATGATTTCATAATCCAGAAAAGTGTAGAGAAAATGGC
TGGTTAGAATGTCAGGTATAAAGACTATACTTTCAGGGATCACTTCTATA
GTTCGTTACTAGAGAAGTTTCTCTGGCTACGTAGAGCACCCGAATATCAG
AGGATGAGACATACCTCCCCTTCTGAGCGTGAATCCGGCTCTAGGTG

TTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXACTGCCTGATAGCACTCCTGCCCTGTAGAAGCCC
ATATCCAGATAACAGGATCTCACCTGTTGCTGCACATGGCCTGTATACTG
TTCAATGAACTCAGTGAATCGAATGTAGTCTGTGCCAAGCCGGCAGAGTC
GATTCAGGACACTAGTCTCACTGGGGTGAAGAAATGGAAAATCCTGGGAA
ACCTGAAAGAAGAGGGATAGTCATAAAGGAAGCTAATGCCTGCTAGTCAC
CAGTCATAAAGGAAGCTAATGCCTGCTAGTCACCAATCAAGGTTCTTTGC
AGCTTAAAATGCTTTCTATTCTCTTTTCTATTTCCTTTCCGTAAGGTGCC
CATGGTTTTACATGGTTTTAATTTTCCTTGTTACTGGGTTGGTAATTCTG
GTTAACAAGGTATTGTTACACAATTACAAGGTCGTGTTCCTCATCCAGAT
GTAATTGCTTGTTCTTAAAATAGGTACCCTAGAGAAAGAATTCACACAAT
AGGAGCTGGAAAGATGTTCTGGGACTCACATAGTAGGAAATTCTTGCAAG
TTGTCCTCTGACCTACACAGAGGGGATCAGGGGAGAGGAGAGGAGAGAGG
ACAGACAGAAACAGACAGAGACAGAGACTCCCTTGGCTTATATCTTCAAA
TTATGTTTTGCTTGAAAGCTTAGGCAAGTTACATCATGGCACCTCTCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no525_f09.b1 MSMg01no525_f09.b1 CHROMAT_FILE:
MSMg01no525_f09.b1 PHD_FILE: MSMg01no525_f09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:54 2005
         (621 letters)



>mm_chr2_120829065_120830085
          Length = 1021

 Score = 1193 bits (617), Expect = 0.0
 Identities = 620/621 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagctacttaaatgaggaacgagtttaatcatgcctgaggtagtctattttactaattat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagctacttaaatgaggaacgagtttaatcatgcctgaggtagtctattttactaattat 260

                                                                       
Query: 61  tatacctaatgcttcatttagtcacttatagaagcagaaagtcaaatgtgctaacaaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatacctaatgcttcatttagtcacttatagaagcagaaagtcaaatgtgctaacaaata 320

                                                                       
Query: 121 cctgtaatctcagagcctgagaggcagaggcagatggctctctgtgagttcaaggtcaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctgtaatctcagagcctgagaggcagaggcagatggctctctgtgagttcaaggtcaac 380

                                                                       
Query: 181 ctggtctacatagtgagttctaggtgagtcagggctacacagcacccacatggtggctca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctggtctacatagtgagttctaggtgagtcagggctacacagcacccacatggtggctca 440

                                                                       
Query: 241 caaccagctgtaactcaatcccaggacatctgatgccatcttctggtctctaagggcaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaccagctgtaactcaatcccaggacatctgatgccatcttctggtctctaagggcaca 500

                                                                       
Query: 301 acatgcatatggcacaaagacgtaatacaggcaagacatgtcataatacacatgaaagta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acatgcatatggcacaaagacgtaatacaggcaagacatgtcataatacacatgaaagta 560

                                                                       
Query: 361 aataaaatctcaaaagaaatttaaaagaaaatattaatgcgttatattaaagttattaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aataaaatctcaaaagaaatttaaaagaaaatattaatgcgttatattaaagttattaca 620

                                                                       
Query: 421 acagaatgttaaaaatcttgagtgtgatggtgttttcaaaatttataaaccatataccta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acagaatgttaaaaatcttgagtgtgatggtgttttcaaaatttataaaccatataccta 680

                                                                       
Query: 481 tttcaagtatatcataaactaaaatgatttcataatccagaaaagtgtagagaaaatggc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttcaagtatatcataaactaaaatgatttcataatccagaaaagtgtagagaaaatggc 740

                                                                       
Query: 541 tggttagaatgtcaggtataaagactatactttcagggatcacttctatagttcgttact 600
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tggttagaatgtcaggtagaaagactatactttcagggatcacttctatagttcgttact 800

                                
Query: 601 agagaagtttctctggctacg 621
           |||||||||||||||||||||
Sbjct: 801 agagaagtttctctggctacg 821


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space:   617721
Effective search space used:   617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no525_f09.g1 MSMg01no525_f09.g1 CHROMAT_FILE:
MSMg01no525_f09.g1 PHD_FILE: MSMg01no525_f09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:55 2005
         (648 letters)



>mm_chr2_120998778_120999825
          Length = 1048

 Score = 1245 bits (644), Expect = 0.0
 Identities = 647/648 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgcctgatagcactcctgccctgtagaagcccatatccagataacaggatctcacctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 actgcctgatagcactcctgccctgtagaagcccatatccagataacaggatctcacctg 643

                                                                       
Query: 61  ttgctgcacatggcctgtatactgttcaatgaactcagtgaatcgaatgtagtctgtgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 ttgctgcacatggcctgtatactgttcaatgaactcagtgaatcgaatgtagtctgtgcc 583

                                                                       
Query: 121 aagccggcagagtcgattcaggacactagtctcactggggtgaagaaatggaaaatcctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aagccggcagagtcgattcaggacactagtctcactggggtgaagaaatggaaaatcctg 523

                                                                       
Query: 181 ggaaacctgaaagaagagggatagtcataaaggaagctaatgcctgctagtcaccagtca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 ggaaacctgaaagaagagggatagtcataaaggaagctaatgcctgctagtcaccagtca 463

                                                                       
Query: 241 taaaggaagctaatgcctgctagtcaccaatcaaggttctttgcagcttaaaatgctttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 taaaggaagctaatgcctgctagtcaccaatcaaggttctttgcagcttaaaatgctttc 403

                                                                       
Query: 301 tattctcttttctatttcctttccgtaaggtgcccatggttttacatggttttaattttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tattctcttttctatttcctttccgtaaggtgcccatggttttacatggttttaattttc 343

                                                                       
Query: 361 cttgttactgggttggtaattctggttaacaaggtattgttacacaattacaaggtcgtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 cttgttactgggttggtaattctggttaacaaggtattgttacacaattacaaggtcgtg 283

                                                                       
Query: 421 ttcctcatccagatgtaattgcttgttcttaaaataggtaccctagagaaagaattcaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ttcctcatccagatgtaattgcttgttcttaaaataggtaccctagagaaagaattcaca 223

                                                                       
Query: 481 caataggagctggaaagatgttctgggactcacatagtaggaaattcttgcaagttgtcc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 caataggagctggaaagatgttctgggactcacatagtaggaaattcttgcaagttgtcc 163

                                                                       
Query: 541 tctgacctacacagaggggatcaggggagaggagaggagagaggacagacagaaacagac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 tctgacctacacagaggggatcaggggagaggagaggagagaggacagacagaaacagac 103

                                                           
Query: 601 agagacagagactcccttggcttatatcttcaaattatgttttgcttg 648
           || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 agggacagagactcccttggcttatatcttcaaattatgttttgcttg 55


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space:   662244
Effective search space used:   662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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