Query= MSMg01no525_p20.b1 MSMg01no525_p20.b1 CHROMAT_FILE:
MSMg01no525_p20.b1 PHD_FILE: MSMg01no525_p20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:47 2005
(607 letters)
>mm_chr2_43244124_43245130
Length = 1007
Score = 791 bits (409), Expect = 0.0
Identities = 531/619 (85%), Gaps = 78/619 (12%)
Strand = Plus / Plus
Query: 5 gaattccagaaattaaaaagataatcctgaaagaagaagggaaaattgtcaagatatact 64
|||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 251 gaattccagaaattaaaactataatcctgaaagaacaagggaaaattgtcaagatatact 310
Query: 65 ccatacagcagttggtgttcataaactattagctctctctgtctctctgtctctgtcatg 124
|||||||||||||||| |||||||||| | |||||||||||||||||||||||||
Sbjct: 311 ccatacagcagttggtattcataaactgt---ctctctctgtctctctgtctctgtc--- 364
Query: 125 tctctgtctctcgctctcgctctctctgtctgacttggctggctggctctctcgctctct 184
|||||||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 365 --tctgtctctcactctc------tctgtctgacttggctggctggctctctc--tctct 414
Query: 185 ctctctctctctctttctctctctctctctctctctctctctctctgtgtgtgtgtgtgt 244
|||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 415 ctctctctctctct--ctctctctctctctctctctctctctgtgtgtgtgtgtgtgtgt 472
Query: 245 gtgtgtgtgtgt----------------atacattcaccattagtatctgtggaggtcag 288
|||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 473 gtgtgtgtgtgtgtgtgtgtgtgtgtgtatacattcaccattagtatctgtggaggtcag 532
Query: 289 aggttggcaatgatacatgttcctcggttgtatttcacaatatgttatatttcactatgc 348
|||| ||||||||||||
Sbjct: 533 aggt--------------------------------------------atttcactatgc 548
Query: 349 attttctgagacatgatttctcactgaacctggaacccaccattccaactaaacttgttg 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 attttctgagacatgatttctcactgaacctggaacccaccattccaactaaacttgttg 608
Query: 409 tcagtgatctctctccaccagacagggttggggttagaggtacatactgccaaaacatac 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tcagtgatctctctccaccagacagggttggggttagaggtacatactgccaaaacatac 668
Query: 469 tatcaatagatatggtggtttcaaacttaggtcttcacagttgtgtggcaaatgatttat 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 tatcaatagatatggtggtttcaaacttaggtcttcacagttgtgtggcaaatgatttat 728
Query: 529 cagctgatccttctccatgaaccctccaagctacttttaaactaagtctcatctactcag 588
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 729 cagctgatccttctccatgaaccctccaagctgcttttaaactaagtctcatctacttag 788
Query: 589 ctgaatgtctcatcctcaa 607
|||||||||||||||||||
Sbjct: 789 ctgaatgtctcatcctcaa 807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 90
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space: 595209
Effective search space used: 595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no525_p20.g1 MSMg01no525_p20.g1 CHROMAT_FILE:
MSMg01no525_p20.g1 PHD_FILE: MSMg01no525_p20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:47 2005
(686 letters)
>mm_chr2_43406205_43407290
Length = 1086
Score = 700 bits (362), Expect = 0.0
Identities = 386/394 (97%)
Strand = Plus / Minus
Query: 292 tagagaaattgaactgagtgtaagcaagcaagccagaattcatgaatttatttctttttg 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1086 tagagaaattgaactgagtgtaagcaagcaagccagaattcatgaatttatttctttttg 1027
Query: 352 ctcttgactgaggagatgggggaaagtaattctttctagttcctgactttatgcctacct 411
||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||
Sbjct: 1026 ctcttgactgaggagatggaggaaagtagctctttctagttcctgacttcatgcctacct 967
Query: 412 tggggaattgttacctgaaatgatgactctaataaactacctaagatgctcttgatcaaa 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966 tggggaattgttacctgaaatgatgactctaataaactacctaagatgctcttgatcaaa 907
Query: 472 gtattttaccagaaatgaaactaaaacaagatcatctcataatcttttggatcttgatga 531
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 gtatttcaccagaaatgaaactaaaacaagatcatctcataatcttttggatcttgatga 847
Query: 532 tgtttcatttagtgtcctcttaacgtctgagaccaattgacacttgcttgtaaagcatag 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 tgtttcatttagtgtcctcttaacgtctgagaccaattgacacttgcttgtaaagcatag 787
Query: 592 caggatcttcaaagagcttgccatactctacaaagcaccttattatgtagtgctaaccct 651
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 786 caggatcttcaaagagcttgccgtactctacaaagcgccttattatgtagtgctaaccct 727
Query: 652 tgagaggcttaaggatcttgaagaaaaatggaaa 685
|||||||||||||||||||||||| |||||||||
Sbjct: 726 tgagaggcttaaggatcttgaagagaaatggaaa 693
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space: 727376
Effective search space used: 727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
