BAC Information

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BAC

Clone NameMSMg01-526B23
Chromosome2 (Build37)
Map Location 87,397,762 - 87,398,105
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038
Downstream geneLOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526B23.T7 (MSMg01no526_b23.b1)MSMg01-526B23.TJ (MSMg01no526_b23.g1)
ACCAG595793AG595794
length744737
length of high quality
(start - end)		540 (38 - 577)428 (70 - 497)
definitionCHROMAT_FILE: MSMg01no526_b23.b1 PHD_FILE: MSMg01no526_b23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:57 2005CHROMAT_FILE: MSMg01no526_b23.g1 PHD_FILE: MSMg01no526_b23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTG
CTTTGTTCACATTCTCGGCCTGGGTGTGTTTGTTTTGGGTCATCAATACT
TGCCATCCTGCTCAGCCCCAGAGACGTCCAGATGGACAGGGTTCTCTCCT
CTTGCCTGTACCTGTTGGTAGAGAGCCTACACACTCCTAGGTGTCCTAAC
ATGCCCAGGATCAAAGGATCAAAGGTGCCCTGAGCAGATCTCGGGTGCTA
ACTCCACAGCCAGTCTCACAACACACAGAAGAAGCTTCACTCCCAGGGGC
TCTAACATGCCCATGACCACAAGATTCCAGAAGCTGGGCTACACCAGGAT
CTCAGGGTCCCAGAGGAATCTGGATTCCCAGGAGCTCTGACACAACCAGG
ATCTCAGGATCACAGAGAAAGCTGAATTCTAAGAAGTTCTGACATAACCA
GGATCACAGAAAGGACAGGCTCTAGTCAGATATAACAAGGGCACATAACA
CTAGAGATAATCAGATAACAAGAGGCAAGCATAAGAACATAAGCAACAGA
AACCAAGGTTACTTGTCATCATCAGAACCAAATTCTTCCATCATAGCAAA
GTCTTGGGTGTACCATCTTCATTGGAAAAGCAAGATTTGGGATCTAAAAG
TCACTTTGTCATAATGGTGACAGAGGATTTTAAGAAAGGACTTAAATAAC
TCCCCTGAAGAAAATCCGGGAGAACCCCGATAAACCGCCTAAAA

ATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACACAATGTGTATTCACTGAGAAGTGGATAT
TAGCCCAAAACCTAGGATACCCAAGATATACAATTTGCTAAACGCATGAA
ACTCAAGAAGAATGAAGACCAAAGTCTGGACACTTTGCCCCTTCTTAGAA
TTGGGAACAAAACACCCATGGAAGGAGTTACAGAGACAATGTTTGGAGCT
TTGATGAAAGGATGGACCATCTAGAGACTGCCATATCCGGGGATCCATCC
CATAATCAGCTTCCAAACGCTGACACCATTGCACACACTAGCAAGATTTT
GCTCAAAGGACCCAGATAGAGCTCTCTCTTGTGAGACTATGCCAGGGCCT
AGCAAACACCGAAGTGGATGCTCACAGTCAGCTATTGGATGGATCACAGG
GCCCCCAATGGAGGAGCTAGAGAAAGTACCCCAGGAGCTAAAGAGATCTG
NCACCCTGTAGGTNNGCACACATTATGAACTAATCAGTACCTCTGAGCTC
TTGACTCTAGCTGCATATGTATCAAAAGATGGCCTAAGTTGGCCATCCCT
GGAAAAAGAAGGCCCATTTGGACTTGCAAACTTTATATGGCCCAATACAG
GGGGATTGCCCGGGGCCCAAAATTGGGAAATGGTTGGGTAGGGTAAATTG
GGGGGGGGNNTTNNATTATTTTATTTTTTTGTGGTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_b23.b1 MSMg01no526_b23.b1 CHROMAT_FILE:
MSMg01no526_b23.b1 PHD_FILE: MSMg01no526_b23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:57 2005
         (540 letters)



>mm_chr2_87397762_87398701
          Length = 940

 Score =  611 bits (316), Expect = e-179
 Identities = 337/344 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctgctttgttcacattctcggcctgggtgtgtttgttttgggtcatcaatactt 64
           ||||||||||||||  || ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 344 gaattcctgctttgaccagattctcggcctgggtgtgtttgttttgggccatcaatactt 285

                                                                       
Query: 65  gccatcctgctcagccccagagacgtccagatggacagggttctctcctcttgcctgtac 124
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 284 gccatcctgctcagccccagagaggtccagatggacagggttctctcctcttgcctgtac 225

                                                                       
Query: 125 ctgttggtagagagcctacacactcctaggtgtcctaacatgcccaggatcaaaggatca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 ctgttggtagagagcctacacactcctaggtgtcctaacatgcccaggatcaaaggatca 165

                                                                       
Query: 185 aaggtgccctgagcagatctcgggtgctaactccacagccagtctcacaacacacagaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 aaggtgccctgagcagatctcgggtgctaactccacagccagtctcacaacacacagaag 105

                                                                       
Query: 245 aagcttcactcccaggggctctaacatgcccatgaccacaagattccagaagctgggcta 304
           ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 104 aagctccactcccaggggctctaacatgcccatgaccacaagattccaggagctgggcta 45

                                                       
Query: 305 caccaggatctcagggtcccagaggaatctggattcccaggagc 348
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44  caccaggatctcagggtcccagaggaatctggattcccaggagc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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