Query= MSMg01no526_f12.b1 MSMg01no526_f12.b1 CHROMAT_FILE:
MSMg01no526_f12.b1 PHD_FILE: MSMg01no526_f12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:14 2005
(579 letters)
>mm_chr2_110843794_110844773
Length = 980
Score = 909 bits (470), Expect = 0.0
Identities = 542/578 (93%), Gaps = 23/578 (3%)
Strand = Plus / Plus
Query: 5 gaattcatatgtttttgtctccttctgaacagtgattatttttgtagcttaactctggaa 64
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 205 gaattcatatgtttttgtctccttctgaacagtgattatttttgttgcttaactctggaa 264
Query: 65 tcatcatttggtattttaataatttcaactttgagttcagtcacaagggattatgatgtt 124
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 265 tcatcatttggtattttaataatttcaactttgagttcagtcacaagagattatgatgtt 324
Query: 125 ttggaagatccaggacaccttcttcttttatgtttcaagcatttgtattttattatttgc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttggaagatccaggacaccttcttcttttatgtttcaagcatttgtattttattattt-- 382
Query: 185 ---aagtatattggtttgggtgtatattatagatttttttttaatggagccatcttattg 241
|||||||||||||||||||||||||||| |||||||| ||||||| |||
Sbjct: 383 tataagtatattggtttgggtgtatattataaattttttt--aatggagacat------- 433
Query: 242 aataacctacagttgaaaggtcattttccagaatcttttattgcagaaaaaaatgctttg 301
||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 434 --------acagttgaaaggtcattttccagaaccttttattgcagaaaaaa-tgctttg 484
Query: 302 ggagcataaacaacagaccatacaagaaacaaatttatactaacacttaagaaaagagtg 361
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 485 ggagcataaacaacagaccataaaagaaacaaatttatactaacacttaagaaaagagtg 544
Query: 362 taaatattaaaaatgtcaaaattgctgtagattttactgtgaagaagaaaataatttaat 421
|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 taaacgttaaaaatgccaaaattgctgtagattttactgtgaagaagaaaataatttaat 604
Query: 422 gtaacaatgggcacagtaaatgaatatgataaaggaagtaggcaagaagatagcaacaaa 481
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 605 gtaacgatgggcacagtaaatgaatatgataaaggaagtaggcaagaagaaagcaacaaa 664
Query: 482 agagaaggaagtttaaatagatgaaaaatgaaagaaaagcagcacgggagaagaaggcga 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 agagaaggaagtttaaatagatgaaaaatgaaagaaaagcagcacgggagaagaaggcga 724
Query: 542 tgaaggcagcatttcaaaacttatgagatggaaaaatt 579
|||||||||||||||||||| |||||||| ||||||||
Sbjct: 725 tgaaggcagcatttcaaaacctatgagatagaaaaatt 762
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 980
Length adjustment: 10
Effective length of query: 569
Effective length of database: 970
Effective search space: 551930
Effective search space used: 551930
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no526_f12.g1 MSMg01no526_f12.g1 CHROMAT_FILE:
MSMg01no526_f12.g1 PHD_FILE: MSMg01no526_f12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:14 2005
(570 letters)
>mm_chr2_110947576_110948545
Length = 970
Score = 1071 bits (554), Expect = 0.0
Identities = 566/570 (99%)
Strand = Plus / Minus
Query: 1 ttagatgttagtatgtgatgcagacattgttggtgcacattcaagctcaggccatttagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 ttagatgttagtatgtgatgcagacattgttggtgcacattcaagctcaggccatttagg 711
Query: 61 atccagttgttgactatcaaaatgtgccttggtaaaatgttattctgattccatggttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 atccagttgttgactatcaaaatgtgccttggtaaaatgttattctgattccatggttct 651
Query: 121 gagttactgatttctaacttgttacatttgtgacaaatgtaaatgtgggctacattttgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 gagttactgatttctaacttgttacatttgtgacaaatgtaaatgtgggctacattttgc 591
Query: 181 tttgatggtattatttttgtaccaaaacatattttgtagtttaggttcgcatggctccct 240
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 590 tttgatggtattatatttgtaccaaaacatattttgtagtttaggttcgcatagctccct 531
Query: 241 aaaaactgctttctaagaatccacatgtacatgttttagattaaagagaatacagtcctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 aaaaactgctttctaagaatccacatgtacatgttttagattaaagagaatacagtcctc 471
Query: 301 aacattaccctgctcatgcttgtataggtagtagtttgtgctctgttattctatgagtga 360
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 470 accattaccctgctcatgcttgtataagtagtagtttgtgctctgttattctatgagtga 411
Query: 361 atgtccaagctgattaattaagcccatattttttatgataaatgatttgtgcctgatact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 atgtccaagctgattaattaagcccatattttttatgataaatgatttgtgcctgatact 351
Query: 421 atacttttgtaaatgttttatgcttgccaactttcagtctaatgtaaaatgcatggaaac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 atacttttgtaaatgttttatgcttgccaactttcagtctaatgtaaaatgcatggaaac 291
Query: 481 ctcttaccatatattgttttgaatgagcttaaatttcttctttggaggcacatggctgta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 ctcttaccatatattgttttgaatgagcttaaatttcttctttggaggcacatggctgta 231
Query: 541 tattgtactactagtttggtagttaggatg 570
||||||||||||||||||||||||||||||
Sbjct: 230 tattgtactactagtttggtagttaggatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space: 537600
Effective search space used: 537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|