BAC Information

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BAC

Clone NameMSMg01-526F12
Chromosome2 (Build37)
Map Location 110,843,998 - 110,948,345
singlet/doubletdoublet
Overlap geneLOC668802
Upstream geneLgr4, Ccdc34, LOC668797, Bbox1, 1110018M03Rik, LOC668799, Slc5a12, Muc15
Downstream geneLOC623270, LOC623301, 4930430A15Rik, Olfr1275, Olfr1276, Olfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282, Olfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295, LOC668822, Olfr1297, Olfr1298, Olfr1299, Olfr1300-ps1, Olfr1301, Olfr1302, Olfr1303, Olfr249-ps1, LOC668825, Olfr1305, Olfr1306, LOC668827, Olfr1307, Olfr1308, Olfr1309, LOC433463, Olfr1310, Olfr1311, Olfr1312, Olfr1313, Olfr1314
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526F12.T7 (MSMg01no526_f12.b1)MSMg01-526F12.TJ (MSMg01no526_f12.g1)
ACCAG595961AG595962
length742744
length of high quality
(start - end)
579 (37 - 615)570 (68 - 637)
definitionCHROMAT_FILE: MSMg01no526_f12.b1 PHD_FILE: MSMg01no526_f12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:14 2005CHROMAT_FILE: MSMg01no526_f12.g1 PHD_FILE: MSMg01no526_f12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,843,998 - 110,844,555)(110,947,776 - 110,948,345)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATAT
GTTTTTGTCTCCTTCTGAACAGTGATTATTTTTGTAGCTTAACTCTGGAA
TCATCATTTGGTATTTTAATAATTTCAACTTTGAGTTCAGTCACAAGGGA
TTATGATGTTTTGGAAGATCCAGGACACCTTCTTCTTTTATGTTTCAAGC
ATTTGTATTTTATTATTTGCAAGTATATTGGTTTGGGTGTATATTATAGA
TTTTTTTTTAATGGAGCCATCTTATTGAATAACCTACAGTTGAAAGGTCA
TTTTCCAGAATCTTTTATTGCAGAAAAAAATGCTTTGGGAGCATAAACAA
CAGACCATACAAGAAACAAATTTATACTAACACTTAAGAAAAGAGTGTAA
ATATTAAAAATGTCAAAATTGCTGTAGATTTTACTGTGAAGAAGAAAATA
ATTTAATGTAACAATGGGCACAGTAAATGAATATGATAAAGGAAGTAGGC
AAGAAGATAGCAACAAAAGAGAAGGAAGTTTAAATAGATGAAAAATGAAA
GAAAAGCAGCACGGGAGAAGAAGGCGATGAAGGCAGCATTTCAAAACTTA
TGAGATGGAAAAATTAAAGAAAAACAAAAAAAAATACTTATTCTTGAAAC
CATTATTAGATAACTATAATAAAGGGGGTTAAAATACTATTAAGAAAACA
ATGACCTTCAATAAAAAATATGCCCAAGTTTAGAGAATGTAG
NXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTAGATGTTAGTATGTGATGCAGACATTGTTGG
TGCACATTCAAGCTCAGGCCATTTAGGATCCAGTTGTTGACTATCAAAAT
GTGCCTTGGTAAAATGTTATTCTGATTCCATGGTTCTGAGTTACTGATTT
CTAACTTGTTACATTTGTGACAAATGTAAATGTGGGCTACATTTTGCTTT
GATGGTATTATTTTTGTACCAAAACATATTTTGTAGTTTAGGTTCGCATG
GCTCCCTAAAAACTGCTTTCTAAGAATCCACATGTACATGTTTTAGATTA
AAGAGAATACAGTCCTCAACATTACCCTGCTCATGCTTGTATAGGTAGTA
GTTTGTGCTCTGTTATTCTATGAGTGAATGTCCAAGCTGATTAATTAAGC
CCATATTTTTTATGATAAATGATTTGTGCCTGATACTATACTTTTGTAAA
TGTTTTATGCTTGCCAACTTTCAGTCTAATGTAAAATGCATGGAAACCTC
TTACCATATATTGTTTTGAATGAGCTTAAATTTCTTCTTTGGAGGCACAT
GGCTGTATATTGTACTACTAGTTTGGTAGTTAGGATGACATTCCAGGTAT
ATGATTTCATCTGGCACTCAAGAATAAATTCTGTAATTGTAATTACAAAC
ATTGAATTAGTATATATGACTTTTGCCCTTANTTTTGGCTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_f12.b1 MSMg01no526_f12.b1 CHROMAT_FILE:
MSMg01no526_f12.b1 PHD_FILE: MSMg01no526_f12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:14 2005
         (579 letters)



>mm_chr2_110843794_110844773
          Length = 980

 Score =  909 bits (470), Expect = 0.0
 Identities = 542/578 (93%), Gaps = 23/578 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatatgtttttgtctccttctgaacagtgattatttttgtagcttaactctggaa 64
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 205 gaattcatatgtttttgtctccttctgaacagtgattatttttgttgcttaactctggaa 264

                                                                       
Query: 65  tcatcatttggtattttaataatttcaactttgagttcagtcacaagggattatgatgtt 124
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 265 tcatcatttggtattttaataatttcaactttgagttcagtcacaagagattatgatgtt 324

                                                                       
Query: 125 ttggaagatccaggacaccttcttcttttatgtttcaagcatttgtattttattatttgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 325 ttggaagatccaggacaccttcttcttttatgtttcaagcatttgtattttattattt-- 382

                                                                       
Query: 185 ---aagtatattggtttgggtgtatattatagatttttttttaatggagccatcttattg 241
              |||||||||||||||||||||||||||| ||||||||  ||||||| |||       
Sbjct: 383 tataagtatattggtttgggtgtatattataaattttttt--aatggagacat------- 433

                                                                       
Query: 242 aataacctacagttgaaaggtcattttccagaatcttttattgcagaaaaaaatgctttg 301
                   ||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 434 --------acagttgaaaggtcattttccagaaccttttattgcagaaaaaa-tgctttg 484

                                                                       
Query: 302 ggagcataaacaacagaccatacaagaaacaaatttatactaacacttaagaaaagagtg 361
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 485 ggagcataaacaacagaccataaaagaaacaaatttatactaacacttaagaaaagagtg 544

                                                                       
Query: 362 taaatattaaaaatgtcaaaattgctgtagattttactgtgaagaagaaaataatttaat 421
           ||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 taaacgttaaaaatgccaaaattgctgtagattttactgtgaagaagaaaataatttaat 604

                                                                       
Query: 422 gtaacaatgggcacagtaaatgaatatgataaaggaagtaggcaagaagatagcaacaaa 481
           ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 605 gtaacgatgggcacagtaaatgaatatgataaaggaagtaggcaagaagaaagcaacaaa 664

                                                                       
Query: 482 agagaaggaagtttaaatagatgaaaaatgaaagaaaagcagcacgggagaagaaggcga 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 agagaaggaagtttaaatagatgaaaaatgaaagaaaagcagcacgggagaagaaggcga 724

                                                 
Query: 542 tgaaggcagcatttcaaaacttatgagatggaaaaatt 579
           |||||||||||||||||||| |||||||| ||||||||
Sbjct: 725 tgaaggcagcatttcaaaacctatgagatagaaaaatt 762


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 980
Length adjustment: 10
Effective length of query: 569
Effective length of database: 970
Effective search space:   551930
Effective search space used:   551930
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no526_f12.g1 MSMg01no526_f12.g1 CHROMAT_FILE:
MSMg01no526_f12.g1 PHD_FILE: MSMg01no526_f12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:14 2005
         (570 letters)



>mm_chr2_110947576_110948545
          Length = 970

 Score = 1071 bits (554), Expect = 0.0
 Identities = 566/570 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttagatgttagtatgtgatgcagacattgttggtgcacattcaagctcaggccatttagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 ttagatgttagtatgtgatgcagacattgttggtgcacattcaagctcaggccatttagg 711

                                                                       
Query: 61  atccagttgttgactatcaaaatgtgccttggtaaaatgttattctgattccatggttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 atccagttgttgactatcaaaatgtgccttggtaaaatgttattctgattccatggttct 651

                                                                       
Query: 121 gagttactgatttctaacttgttacatttgtgacaaatgtaaatgtgggctacattttgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 gagttactgatttctaacttgttacatttgtgacaaatgtaaatgtgggctacattttgc 591

                                                                       
Query: 181 tttgatggtattatttttgtaccaaaacatattttgtagtttaggttcgcatggctccct 240
           |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 590 tttgatggtattatatttgtaccaaaacatattttgtagtttaggttcgcatagctccct 531

                                                                       
Query: 241 aaaaactgctttctaagaatccacatgtacatgttttagattaaagagaatacagtcctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 aaaaactgctttctaagaatccacatgtacatgttttagattaaagagaatacagtcctc 471

                                                                       
Query: 301 aacattaccctgctcatgcttgtataggtagtagtttgtgctctgttattctatgagtga 360
           | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 470 accattaccctgctcatgcttgtataagtagtagtttgtgctctgttattctatgagtga 411

                                                                       
Query: 361 atgtccaagctgattaattaagcccatattttttatgataaatgatttgtgcctgatact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 atgtccaagctgattaattaagcccatattttttatgataaatgatttgtgcctgatact 351

                                                                       
Query: 421 atacttttgtaaatgttttatgcttgccaactttcagtctaatgtaaaatgcatggaaac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 atacttttgtaaatgttttatgcttgccaactttcagtctaatgtaaaatgcatggaaac 291

                                                                       
Query: 481 ctcttaccatatattgttttgaatgagcttaaatttcttctttggaggcacatggctgta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 ctcttaccatatattgttttgaatgagcttaaatttcttctttggaggcacatggctgta 231

                                         
Query: 541 tattgtactactagtttggtagttaggatg 570
           ||||||||||||||||||||||||||||||
Sbjct: 230 tattgtactactagtttggtagttaggatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space:   537600
Effective search space used:   537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)