Query= MSMg01no526_h18.b1 MSMg01no526_h18.b1 CHROMAT_FILE:
MSMg01no526_h18.b1 PHD_FILE: MSMg01no526_h18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:25 2005
(696 letters)
>mm_chr2_149704207_149705302
Length = 1096
Score = 768 bits (397), Expect = 0.0
Identities = 478/539 (88%), Gaps = 56/539 (10%)
Strand = Plus / Minus
Query: 5 gaattcatcacagatggtaaacacaagatacaaagttgaaaggaaataaggaataactag 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 gaattcatcacagacggtaaacacaagatacaaagttgaaaggaaataaggaataactag 480
Query: 65 taatctttagcaagcaatggcaagagaaaacaacaataatagttgtaattaaggtaaact 124
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 479 taatctttagcaagcaatggcaagagaaaacaacaataatagttgtaatcaaggtaaaat 420
Query: 125 ctggtgttagaaaatctagatgaagaagaaacattgaataaatatataaaatggggaaga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 ctggtgttagaaaatctagatgaagaagaaacattgaataaatatataaaatggggaaga 360
Query: 185 ggttctaagatctttgtattgttaagaagaatgaagacagtataaactctagaactgaat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ggttctaagatctttgtattgttaagaagaatgaagacagtataaactctagaactgaat 300
Query: 245 tattgaaaaataaatttaacacttttaacagttaacatctattgacatgaataagtagta 304
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 299 tattgaaaaataaatttaacacttgtaacagttaacatctattgacatgaataagtagta 240
Query: 305 aaaaatagtatacctgctaaatgtgtgtgcatgtttctct--ctctctct---------- 352
|||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 239 aaaaatagtatacctgctaaatgtgtgtgcatgtttctctgtctctctctgtctctctgt 180
Query: 353 ----------------ctctctctctc-ct---tctctctctctttctctctct------ 386
||||||||||| || ||||||||||| |||||||||
Sbjct: 179 ctctctgtctctctgtctctctctctctctctgtctctctctctctctctctctctctct 120
Query: 387 ------------------gtgtgtgtgtgtgtatgtgtgatttattagaattgcttgcaa 428
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 ctctctctttctctgtgtgtgtgtgtgtgtgtatgtgtgatttattagaattgcttgcaa 60
Query: 429 agaaataaccttaagaaaagctagagagctaggattatctcataatcacaaattattga 487
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59 agaaataaccttaagaaaagctagagagctaggattatctcataatcacaaattattga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1096
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1086
Effective search space: 744996
Effective search space used: 744996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no526_h18.g1 MSMg01no526_h18.g1 CHROMAT_FILE:
MSMg01no526_h18.g1 PHD_FILE: MSMg01no526_h18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:25 2005
(599 letters)
>mm_chr2_149586271_149587269
Length = 999
Score = 1112 bits (575), Expect = 0.0
Identities = 591/599 (98%), Gaps = 5/599 (0%)
Strand = Plus / Plus
Query: 1 taatcaacatggaagtattcctcttgaccattttcagccaaacttcatttcttcctcaag 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 taatcaacatggaagtattcctcttgaccattttcagccaaactccatttcttcctcaag 260
Query: 61 ccacaggcagccactgctgttcctgtggtggtcatcatatgaaagaaatcccatagcaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccacaggcagccactgctgttcctgtggtggtcatcatatgaaagaaatcccatagcaca 320
Query: 121 tgattttgtatacctgtcctcttttagttgctacagttggggaggattgaatttattggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgattttgtatacctgtcctcttttagttgctacagttggggaggattgaatttattggc 380
Query: 181 catttgatgataatttccatcttggcaatattgactgaccctatgcaaggacataggagg 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 catttgatgataatttccatcttggcaatattgactgaccctatgcaagggcataggagg 440
Query: 241 tatttacattgacaactgttatgtttttccttagctatattttaatttttaatgtacaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatttacattgacaactgttatgtttttccttagctatattttaatttttaatgtacaaa 500
Query: 301 tcttatcttttatggcctccaatcatatttattttatatttcttgttactattataaatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcttatcttttatggcctccaatcatatttattttatatttcttgttactattataaatg 560
Query: 361 gaatatcttacataatctcattttggattactcattgctagcacagttgatatttgtata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaatatcttacataatctcattttggattactcattgctagcacagttgatatttgtata 620
Query: 421 ttgatctggtattctgcaaagtaacctcatgtatgaattctagagcattttatgcatgag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgatctggtattctgcaaagtaacctcatgtatgaattctagagcattttatgcatgag 680
Query: 481 tcaatttcttagaactttctccttagggccatataggataatcctgtggataagatgttg 540
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 681 tcaatttcttagaactttctccttagggccatataggataatcctgtggatatgatgttg 740
Query: 541 ttcttgttttttttttttttccattatgtatgtgcttcatcatttttttctattttgta 599
||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttcttgttttttttt-----ccattatgtatgtgcttcatcatttttttctattttgta 794
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space: 582521
Effective search space used: 582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
