Query= MSMg01no526_p14.b1 MSMg01no526_p14.b1 CHROMAT_FILE:
MSMg01no526_p14.b1 PHD_FILE: MSMg01no526_p14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:04 2005
(693 letters)
>mm_chr2_42249501_42250593
Length = 1093
Score = 1123 bits (581), Expect = 0.0
Identities = 663/691 (95%), Gaps = 6/691 (0%)
Strand = Plus / Minus
Query: 5 gaattcatcattattgttttataccagctcacaatt-atttttttctaatttaaatgaat 63
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 707 gaattcatcattagtgttttataccagctcacaattaatttttttctaatttaaatgaat 648
Query: 64 atcagttctaatatctagaaatcgtctcagtcctaatctgtgcagaaaaggagcagaaac 123
||||||| ||| ||||||||||| |||||||||||||||||| |||||||||||| || |
Sbjct: 647 atcagttttaacatctagaaatcatctcagtcctaatctgtgtagaaaaggagca-aatc 589
Query: 124 tgcactaacttattgttccatcttgtttttaacacatgttaaatgtctacgatgagaaca 183
||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||
Sbjct: 588 tgcactaacttattgttccatcttgttataaacacatgttaaatgtctacgatgcgaaca 529
Query: 184 tcagagggtcagaaatttcttaaaagccataggctactgactgtaaaacattaaaatgct 243
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 528 tcagagggtcagaaatttcttaaaagccataggctactgactgtgaaacattaagatgct 469
Query: 244 tctgggttgtgtagactgttcagttggtaaaatgtttgccccatgtctaaagacctaaga 303
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 468 tctgggttgtgtagactgttcagttggtaaaatgtttgccccatgcctaaagacctaaga 409
Query: 304 ttggaaccctagcttccaaacaaaggtttacgtggctctgcgtcactgtaattgcagttc 363
|||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 408 ttggaaccctagctcccaaacaaaggtttacatggctctgcatcactgtaattgcagttc 349
Query: 364 taggaagcaaagacagaaaacagactttatctgctgaacagcaactagtctacatgatct 423
||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||
Sbjct: 348 taggaagcaaagacagaaaactgccttcatctgctgaacagcaactagtctacatgatct 289
Query: 424 gggacaccgaggttcactgaaagcacctgtgtcagaaagaaaatggaaagtgattgagaa 483
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 gggacatctaggttcactgaaagcacctgtgtcagaaagaaaatggaaagtgattgagaa 229
Query: 484 acacacttgaagtcaatttctaacct-ctacatactcacatgcatttgtatatgcatgca 542
|||||||||||||||||||||||| | ||||||||||| ||||||||||||||||| |||
Sbjct: 228 acacacttgaagtcaatttctaac-tgctacatactcatatgcatttgtatatgcacgca 170
Query: 543 cacacacaaacacacacacagaggtttttttcaactaacttggtaaaattataattgatt 602
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 cacacacaaacacacaca--gaggtttttttcaactaacttggtaaaattataattgatt 112
Query: 603 tttatataaattttagcattataataagctgatttagctttgttatatttgattcaaatt 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 tttatataaattttagcattataataagctgatttagctttgttatatttgattcaaatt 52
Query: 663 ttgctagtgcattcattttataaatattttt 693
|||||||||||||||||||||||||||||||
Sbjct: 51 ttgctagtgcattcattttataaatattttt 21
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1093
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1083
Effective search space: 739689
Effective search space used: 739689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no526_p14.g1 MSMg01no526_p14.g1 CHROMAT_FILE:
MSMg01no526_p14.g1 PHD_FILE: MSMg01no526_p14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:04 2005
(660 letters)
>mm_chr2_42051876_42052936
Length = 1061
Score = 1230 bits (636), Expect = 0.0
Identities = 655/664 (98%), Gaps = 7/664 (1%)
Strand = Plus / Plus
Query: 1 aaaagggagtgagaggcacttcttcatctcaggaaagctaaaccatcaagaataggtgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 aaaagggagtgagaggcacttcttcatctcaggaaagctaaaccatcaagaataggtgct 256
Query: 61 tgagaaagacagacactagctgcttctgctgcaaaggactcaggacgatctgtgaaacat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tgagaaagacagacactagctgcttctgctgcaaaggactcaggacgatctgtgaaacat 316
Query: 121 gttcttggaaaagagatcattcgctggcaggaagcacggttcacttgagacttttggaac 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 317 gttcttggaaaagagatcattcgctggcaggaggcacggttcacttgagacttttggaac 376
Query: 181 aagcaagcagagagtcaacaacaaccatgcatatttgggagattatttttttcaagagaa 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 377 aagcaagcagagagtcaacaacaaccatgcatatttgggagatt-tttttttcaagagaa 435
Query: 241 tgttgaatgatttt-----ttttgttttgttttgttttttctgtttagacaaaaggcaaa 295
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tgttgaatgattttttttgttttgttttgttttgttttttctgtttagacaaaaggcaaa 495
Query: 296 cctgatggaatgcattgaataactcatttagaaaaaat-aaaaacagtaaacaatgctaa 354
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 496 cctgatggaatgcattgaataactcatttagaaaaaataaaaaacagtaaacaatgctaa 555
Query: 355 aattgagagatggatcatcaggaaaggcatgctgtaagtaaaaagcagtgatgtgaccca 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 aattgagagatggatcatcaggaaaggcatgctgtaagtaaaaagcagtgatgtgaccca 615
Query: 415 aacctgttagtgggcaccttgaaactcggaaaactgacagtgctgaagagcggggatgtg 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 616 aacctgttagtgggcaccttgaaactcggaaaactgacagtgctgaagagcgggggtgtg 675
Query: 475 gctactgaatacctctgtgtttcaaaactaaatatgtagacgaactggatacttgggaag 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 gctactgaatacctctgtgtttcaaaactaaatatgtagacgaactggatacttgggaag 735
Query: 535 cataagtaacctggataataaagtagatgtttgtgatacttgtagaagactcagaaacgt 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 cataagtaacctggataataaagtagatgtttgtgatacttgtagaagactcagaaacgt 795
Query: 595 ctcagtggcattctacccacatgaaaatttccagctttgagtgaaaggaaggctgtgaga 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 ctcagtggcattctacccacatgaaaatttccagctttgagtgaaaggaaggctgtgaga 855
Query: 655 ctct 658
||||
Sbjct: 856 ctct 859
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1061
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1051
Effective search space: 683150
Effective search space used: 683150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
