BAC Information

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BAC

Clone NameMSMg01-527B04
Chromosome2 (Build37)
Map Location 35,162,909 - 35,163,558
singlet/doubletsinglet
Overlap geneGsn
Upstream genePbx3, LOC665948, Mapkap1, LOC623448, LOC623269, Gapvd1, Hspa5, Rabepk, Fbxw2, EG623370, Psmd5, D730039F16Rik, Phf19, Traf1, Hc, AI182371, Rab14
Downstream geneStom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194, Dab2ip, Ttll11, Ndufa8, 1700010A17Rik, Lhx6, Rbm18, LOC100042236, Mrrf, LOC100040493, Ptgs1, Olfr334-ps1, Olfr335
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-527B04.T7 (MSMg01no527_b04.b1)MSMg01-527B04.TJ (MSMg01no527_b04.g1)
ACCAG596512AG596513
length553733
length of high quality
(start - end)
---648 (79 - 726)
definitionCHROMAT_FILE: MSMg01no527_b04.b1 PHD_FILE: MSMg01no527_b04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:11 2005CHROMAT_FILE: MSMg01no527_b04.g1 PHD_FILE: MSMg01no527_b04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGTTACCAAAATGGGCCTAAACATACATACGGAAGACCCGGAATCGGAAC
GAACCAGCCCAGCAAGAGAACAAACCAATACGAAGNCNCAATTNNCNNTT
GGGGGGGGNNNCCCCCCCCCAAAGGGTTTTCTNNCCCCCCCCCTTGTTTT
CTTATTTTGAGCAGGGTCCCTAAGCTACAATCAAAACGGGGGCCAAATTT
TTTGAAATTTGAAAAACAAACCCTCCCAAACCCCGGGCCCTCCCCAAAAA
GCGGGAAAAAAAAAAAGGGGGGGGGCCAAAAGGTCGGCCCCCAAACCCCC
AACCCCACAGAAAGGAAAGGAAGGAAACCCCCCCCCCCAAAAAACAAAAA
AATTGGGAAAGGGAAAAAAAAAAAATTCGGGGCCCCCCAAAAATTTTTGA
AAAAATTTAAAAACCCCCCCAAAAAAAAAAAAAAAAATTCCCCAAAAAAA
AAAAAAAAAACTTTTTAAAAAAAAAACACCCCGAAGAGGAAAAAACCCGA
AAAAAAAACTTTGAAAAAAAAAAAAATTTTTTTAAAAAAAAAAAAAAAAA
CCC
NNNNGGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATGTGGGGCCTTTGCCTGTGTT
CAGTGGTGGTGGTCAGTAGGGCTATTCTCTTCCTGAGGAGATCACACTGA
GAGTCCCTGCGTCTCCTTCCCCTTGTGTGTCTGCAGCTAAGCGGTACATC
GAGACAGATCCAGCAAATCGGGACAGGCGGACCCCCATCACAGTCGTTAG
GCAGGGCTTTGAGCCTCCTTCCTTCGTGGGCTGGTTCCTCGGCTGGGATG
ACAACTACTGGTCGGTGGATCCTTTGGACCGGGCCTTGGCTGAGCTGGCT
GCCTGAGTAAGGACCAAAGCCATCAATGTCACCAATCAGTGCCTTTGAGG
GTTGTCCATCTCCCAAAGACATCATATGGCAAGCAGGAAAACTGGTGTGT
GTGCACGTGTTTTTGTTTTTGTTTTTTACGGTAGCCAAAACAAGCCCTGT
GGAAACTCAGGGTCTTTACAGAATTGCTTCAAATGTCTGTACTTTGGAAA
TGAAAGCCAATAAAAGCTTTTTGAAGTGTGTTCTCCCCAGGTGTCTCACT
GCTTTCTGTATTCCATGGCTACCCTCCCTGTTCATGACCCGGTGATCCGG
AGGGGCCCAGGCAGAAGCCTCCCATGGGCCAGTGAGCGAGCAGATGAACT
TTTATCCATCCTGCGTGTGCATTTCGGTCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no527_b04.g1 MSMg01no527_b04.g1 CHROMAT_FILE:
MSMg01no527_b04.g1 PHD_FILE: MSMg01no527_b04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:11 2005
         (648 letters)



>mm_chr2_35162709_35163758
          Length = 1050

 Score = 1207 bits (624), Expect = 0.0
 Identities = 643/650 (98%), Gaps = 2/650 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtggggcctttgcctgtgttcagtggtggtggtcagtagggctattctcttcctgagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgtggggcctttgcctgtgttcagtggtggtggtcagtagggctattctcttcctgagg 260

                                                                       
Query: 61  agatcacactgagagtccctgcgtctccttccccttgtgtgtctgcagctaagcggtaca 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agatcactctgagagtccctgcgtctccttccccttgtgtgtctgcagctaagcggtaca 320

                                                                       
Query: 121 tcgagacagatccagcaaatcgggacaggcggacccccatcacagtcgttaggcagggct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcgagacagatccagcaaatcgggacaggcggacccccatcacagtcgttaggcagggct 380

                                                                       
Query: 181 ttgagcctccttccttcgtgggctggttcctcggctgggatgacaactactggtcggtgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgagcctccttccttcgtgggctggttcctcggctgggatgacaactactggtcggtgg 440

                                                                       
Query: 241 atcctttggaccgggccttggctgagctggctgcctgagtaaggaccaaagccatcaatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcctttggaccgggccttggctgagctggctgcctgagtaaggaccaaagccatcaatg 500

                                                                       
Query: 301 tcaccaatcagtgcctttgagggttgtccatctcccaaagacatcatatggcaagcagga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcaccaatcagtgcctttgagggttgtccatctcccaaagacatcatatggcaagcagga 560

                                                                       
Query: 361 aaact--ggtgtgtgtgcacgtgtttttgtttttgttttttacggtagccaaaacaagcc 418
           |||||  | |||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaactatgatgtgtgcgcgcgtgtttttgtttttgttttttacggtagccaaaacaagcc 620

                                                                       
Query: 419 ctgtggaaactcagggtctttacagaattgcttcaaatgtctgtactttggaaatgaaag 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgtggaaactcagggtctttacagaattgcttcaaatgtctgtactttggaaatgaaag 680

                                                                       
Query: 479 ccaataaaagctttttgaagtgtgttctccccaggtgtctcactgctttctgtattccat 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccaataaaagctttttgaagtgtgttctccccaggtgtctcactgctttctgtattccat 740

                                                                       
Query: 539 ggctaccctccctgttcatgacccggtgatccggaggggcccaggcagaagcctcccatg 598
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 741 ggctaccctccctgttcatgacccggtgatccggaggggcccaggcagacgcctcccatg 800

                                                             
Query: 599 ggccagtgagcgagcagatgaacttttatccatcctgcgtgtgcatttcg 648
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ggccagtgagcgagcagatgaacttttatccatcctgcgtgtgcatttcg 850


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1050
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1040
Effective search space:   663520
Effective search space used:   663520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)