BAC Information

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BAC

Clone NameMSMg01-528A01
Chromosome2 (Build37)
Map Location 139,829,846 - 139,969,482
singlet/doubletdoublet
Overlap geneTasp1, LOC672103, LOC269365, Esf1
Upstream geneLOC628103, C130053K05Rik, LOC100043792, 5430433G21Rik
Downstream gene2310003L22Rik, Sel1l2, 2900006F19Rik, Flrt3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-528A01.T7 (MSMg01no528_a01.b1)MSMg01-528A01.TJ (MSMg01no528_a01.g1)
ACCAG597223AG597224
length750738
length of high quality
(start - end)
702 (49 - 750)592 (83 - 674)
definitionCHROMAT_FILE: MSMg01no528_a01.b1 PHD_FILE: MSMg01no528_a01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:28 2005CHROMAT_FILE: MSMg01no528_a01.g1 PHD_FILE: MSMg01no528_a01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,968,784 - 139,969,482)(139,829,846 - 139,830,437)
sequence
GAAGCCATAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTCTTGTTTCCTTATATCTTAGCCATTCATGTAAAAGATTTC
ATTCATTTTCTACCTTGCCTACAATTATATAAAAATAACATAAATGTATA
AAAATAACAATAGAACAAGTAATTTTTCAGTATTTGCCATAAATAAGTTA
TCAGAATGGTTTTCCCAGACTTGGCTAGAAGTTAGAGGACAGCTTAGTAG
TATGTTATTGTAATTACAAACTGCATGAAAGGCAAGAAAAACATACAAAT
AAACTTGAGACAAATACAGAAAACAATAGCTCCCTAATGAGGCCCAGATG
TCTTGTATTTGAATTCAGTGTTGTAGGAATATTGAGTGCTAAGAAGCAGG
CATAGGGGACAGTTTGATGTGTGGTGAAGTTGGTACCCTGGAATTGGAAG
CCATTACTTTAAGAGAAACTGAAAGGGGATTTCAAAGTTAGAGAAAGACA
ACCCAAATTCTAGACAAATGTAAAGCCTTTTCTACCAGTGAAATAACTTT
AGACAATAACAGCAAAATGCAACATCTATTCAGTGAGTACTCTGGGCTTA
TCTTCCTTGTATATTTATTAAATGTTTGGCAATGAAGTTATGTGAGTAGA
AATTCCCAGTCAGATCATCTTTTAGATTTATCCTTATTATCTTCATTTTA
ACTGTATACTTTTCACATAGTAGGTATAACAGGATTCTAATAGTATTGAG

NTTTTATCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAACCTAGGGAGTATAA
ATTTTCTGAGGCTATGAATAATGTCGACTATTGCATGAGACTTTAGCTGT
CTCATTTTAGCTCCACTCTCCCAGGTTCCACTGCCTTTAGAGTGGTAAAT
ACTTTGCTGTATAGAAACTAAGCCTATGTATCAACAGATGGGACTACACA
AAAATAAAATTTCTGTACAGGAGAGGTATAGCAATACATTTCTAGGACTG
GGAAACTCTCAGCACACTCTTCTTGTGCAGAAACCTAACCAGGCAGGGAA
AAAATTCTGGAGCCATTTATTCTCATATGCATGAAGATTTGCCATTTGTC
TCTCTAAGTTACAACAGCTACAAGATATAACTTAGGGTACTAGTAGTTCA
ACTCATAACATGTTTACCAAACTAGCTCAAGGACCTGAGCTCAAGCCCTA
GAACTCACAAAATACCAGCCATAGTAGTGCTGGGGGGAAAGGGGGTACTG
GGCAGGCAAATACTTGAGATTCCATGAACAACCACTCTAGCCTACTTGGC
TAGTTCCAAGCCAGTAAAAGACTCTGTCTCAAAAAGAAGGTAAGGGGTAC
CTAATGATACCCAAGGTTGTGCTCTGGCCTCCACAAATGCAAACATACAC
ATACCAACACATACATAACTATGCACATATGCAAACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no528_a01.b1 MSMg01no528_a01.b1 CHROMAT_FILE:
MSMg01no528_a01.b1 PHD_FILE: MSMg01no528_a01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:28 2005
         (702 letters)



>mm_chr2_139968475_139969576
          Length = 1102

 Score = 1328 bits (687), Expect = 0.0
 Identities = 696/699 (99%)
 Strand = Plus / Minus

                                                                        
Query: 4    ggaattcttcttgtttccttatatcttagccattcatgtaaaagatttcattcattttct 63
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1008 ggaattcttcttgtttccttatatcttagccattcatgtaaaagatttcattcattttct 949

                                                                        
Query: 64   accttgcctacaattatataaaaataacataaatgtataaaaataacaatagaacaagta 123
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 948  accttgcctacaattatataaaaataacataaatgtataaaaataacaatagaacaagta 889

                                                                        
Query: 124  atttttcagtatttgccataaataagttatcagaatggttttcccagacttggctagaag 183
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888  atttttcagtatttgccataaataagttatcagaatggttttcccagacttggctagaag 829

                                                                        
Query: 184  ttagaggacagcttagtagtatgttattgtaattacaaactgcatgaaaggcaagaaaaa 243
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828  ttagaggacagcttagtagtatgttattgtaattacaaactgcatgaaaggcaagaaaaa 769

                                                                        
Query: 244  catacaaataaacttgagacaaatacagaaaacaatagctccctaatgaggcccagatgt 303
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768  catacaaataaacttgagacaaatacagaaaacaatagctccctaatgaggcccagatgt 709

                                                                        
Query: 304  cttgtatttgaattcagtgttgtaggaatattgagtgctaagaagcaggcataggggaca 363
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 708  cttgtatttgaattcagtgttgtaggaatattgaatgctaagaagcaggcataggggaca 649

                                                                        
Query: 364  gtttgatgtgtggtgaagttggtaccctggaattggaagccattactttaagagaaactg 423
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648  gtttgatgtgtggtgaagttggtaccctggaattggaagccattactttaagagaaactg 589

                                                                        
Query: 424  aaaggggatttcaaagttagagaaagacaacccaaattctagacaaatgtaaagcctttt 483
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588  aaaggggatttcaaagttagagaaagacaacccaaattctagacaaatgtaaagcctttt 529

                                                                        
Query: 484  ctaccagtgaaataactttagacaataacagcaaaatgcaacatctattcagtgagtact 543
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528  ctaccagtgaaataactttagacaataacagcaaaatgcaacatctattcagtgagtact 469

                                                                        
Query: 544  ctgggcttatcttccttgtatatttattaaatgtttggcaatgaagttatgtgagtagaa 603
            ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 468  ctgggcttaccttccttgtatatttattaaatgtttggcaattaagttatgtgagtagaa 409

                                                                        
Query: 604  attcccagtcagatcatcttttagatttatccttattatcttcattttaactgtatactt 663
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408  attcccagtcagatcatcttttagatttatccttattatcttcattttaactgtatactt 349

                                                   
Query: 664  ttcacatagtaggtataacaggattctaatagtattgag 702
            |||||||||||||||||||||||||||||||||||||||
Sbjct: 348  ttcacatagtaggtataacaggattctaatagtattgag 310


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1102
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1092
Effective search space:   755664
Effective search space used:   755664
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
Query= MSMg01no528_a01.g1 MSMg01no528_a01.g1 CHROMAT_FILE:
MSMg01no528_a01.g1 PHD_FILE: MSMg01no528_a01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:28 2005
         (592 letters)



>mm_chr2_139829646_139830637
          Length = 992

 Score = 1137 bits (588), Expect = 0.0
 Identities = 591/592 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaacctagggagtataaattttctgaggctatgaataatgtcgactattgcatgagact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaacctagggagtataaattttctgaggctatgaataatgtcgactattgcatgagact 260

                                                                       
Query: 61  ttagctgtctcattttagctccactctcccaggttccactgcctttagagtggtaaatac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 ttagctgtctcattttagctccactctcccaggttccactgcctttagagtggcaaatac 320

                                                                       
Query: 121 tttgctgtatagaaactaagcctatgtatcaacagatgggactacacaaaaataaaattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgctgtatagaaactaagcctatgtatcaacagatgggactacacaaaaataaaattt 380

                                                                       
Query: 181 ctgtacaggagaggtatagcaatacatttctaggactgggaaactctcagcacactcttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgtacaggagaggtatagcaatacatttctaggactgggaaactctcagcacactcttc 440

                                                                       
Query: 241 ttgtgcagaaacctaaccaggcagggaaaaaattctggagccatttattctcatatgcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgtgcagaaacctaaccaggcagggaaaaaattctggagccatttattctcatatgcat 500

                                                                       
Query: 301 gaagatttgccatttgtctctctaagttacaacagctacaagatataacttagggtacta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaagatttgccatttgtctctctaagttacaacagctacaagatataacttagggtacta 560

                                                                       
Query: 361 gtagttcaactcataacatgtttaccaaactagctcaaggacctgagctcaagccctaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtagttcaactcataacatgtttaccaaactagctcaaggacctgagctcaagccctaga 620

                                                                       
Query: 421 actcacaaaataccagccatagtagtgctggggggaaagggggtactgggcaggcaaata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 actcacaaaataccagccatagtagtgctggggggaaagggggtactgggcaggcaaata 680

                                                                       
Query: 481 cttgagattccatgaacaaccactctagcctacttggctagttccaagccagtaaaagac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cttgagattccatgaacaaccactctagcctacttggctagttccaagccagtaaaagac 740

                                                               
Query: 541 tctgtctcaaaaagaaggtaaggggtacctaatgatacccaaggttgtgctc 592
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tctgtctcaaaaagaaggtaaggggtacctaatgatacccaaggttgtgctc 792


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space:   571524
Effective search space used:   571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)