Query= MSMg01no528_e22.b1 MSMg01no528_e22.b1 CHROMAT_FILE:
MSMg01no528_e22.b1 PHD_FILE: MSMg01no528_e22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:52 2005
(608 letters)
>mm_chr2_145075316_145076324
Length = 1009
Score = 1033 bits (534), Expect = 0.0
Identities = 567/586 (96%), Gaps = 16/586 (2%)
Strand = Plus / Minus
Query: 37 gcttccagttgagcaagagacagtatttcaagggaaaatggtagagagtgatagggca-- 94
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1009 gcttctagttgagcaagagacagtatttcaagggaaaatggtagagagtgatagggcaac 950
Query: 95 acacacacatacacacacacacacacacacacacacacacacacacacagagagagagag 154
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 949 acacacacacacacacacacacacacacacacacacacacacacacacagagagagagag 890
Query: 155 agagagagagagagagagagag-----------agagagagagagagagaggcagagaga 203
|||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 889 agagagagagagagagagagagagagagagagaagagagagagagagagaggc--agaga 832
Query: 204 tagagagacagagacagagagaaggcaaatgtatctacaaagagaagttaaagttgttta 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 tagagagacagagacagagagaaggcaaatgtatctacaaagagaagttaaagttgttta 772
Query: 264 accttgagcaatgatttatagatttttcagcctttaaatttcattttttttctgggttca 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 accttgagcaatgatttatagatttttcagcctttaaatttcattttttttctgggttca 712
Query: 324 ataccagcaatgataacactgaggtggtttcaactggttgttcctaatgtttttcgtgtg 383
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 711 ataccagcaatgataacactgaggtggttacaactggttgttcctaatgtttttcgtgtg 652
Query: 384 tttgatagaaatatattcaatgtgatttttgtaatttttatctgtacaaccttactttta 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 tttgatagaaatatattcaatgtgatttttgtaatttttatctgtacaaccttactttta 592
Query: 444 caaggtagctgcaagaaaaacataagcttgcatttgagtcagcattaagttcctctttgt 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 caaggtagctgcaagaaaaacataagcttgcatttgagtcagcattaagttcctctttgt 532
Query: 504 ccaaagtagataatgtgaagctcaggttatctgtgcacatctacacagtgtgtatctatt 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 ccaaagtagataatgtgaagctcaggttatctgtgcacatctacacagtgtgtatctatt 472
Query: 564 -gggggggagccccacttggcttctaagtcccatcacctttgggtt 608
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 ggggggggagccccacttggcttctaagtcccatcacctttgggtt 426
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 126
Number of extensions: 33
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1009
Length adjustment: 10
Effective length of query: 598
Effective length of database: 999
Effective search space: 597402
Effective search space used: 597402
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no528_e22.g1 MSMg01no528_e22.g1 CHROMAT_FILE:
MSMg01no528_e22.g1 PHD_FILE: MSMg01no528_e22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:52 2005
(580 letters)
>mm_chr2_144927512_144928491
Length = 980
Score = 1071 bits (554), Expect = 0.0
Identities = 577/588 (98%), Gaps = 8/588 (1%)
Strand = Plus / Plus
Query: 1 ctttaatattagacaatcatgtgggtggaccacagtttgtatgcagtccaatcattgact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 193 ctttaatattagacaatcatgtgggtggaccacagtttgtatgcagtccaatcgttgact 252
Query: 61 actttttttcttttgatttatgtacagcagatgactagaattttcttgagcgatggactt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 actttttttcttttgatttatgtacagcagatgactagaattttcttgagcgatggactt 312
Query: 121 -gtctacacatgggggaaagatttttgctagccacaagaataaggggaatatttttt-ac 178
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 313 tgtcttcacatgggggaaagatttttgctagccacaagaataaggggaatatttttttac 372
Query: 179 tttgttttaatctttatttttgcagatcgagagactgacatattacaagatattttggtt 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tttgttttaatctttatttttgcagatcgagagactgacatattacaagatattttggtt 432
Query: 239 gtgttaaaaatttataagatggcccacaagatggctcagcagataaaggcacttgtccca 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gtgttaaaaatttataagatggcccacaagatggctcagcagataaaggcacttgtccca 492
Query: 299 agactagtaacctgggttcaggtcctagaactcacacagtggaaggagagaaccaactcc 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 agactagtaacctgggttcaggtcctagaactcacacagtggaaggagagaaccaactcc 552
Query: 359 cacaagttgtctttggatcttcacacacatactacaacacatgtggatctaacccccccc 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 cacaagttgtctttggatcttcacacacatactacaacacatgtggatctaacccccccc 612
Query: 419 cc------acacacgcacgcgcacacacacacagagccacacacccatgagcaaatgtat 472
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ccccccacacacacgcgcgcgcacacacacacagagccacacacccatgagcaaatgtat 672
Query: 473 gcactgaataggtgtagcaaaacattaataaggcaactgaagtgaaaaattgaagctatt 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 gcactgaataggtgtagcaaaacattaataaggcaactgaagtgaaaaattgaagctatt 732
Query: 533 gctacacaggaaaaaagtcagataatggttaaacatttgtcactggag 580
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 gctacacaggaaaaaagtcagataatggttaaacatttgtcactggag 780
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space: 552900
Effective search space used: 552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
