BAC Information

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BAC

Clone NameMSMg01-528K09
Chromosome2 (Build37)
Map Location 81,778,845 - 81,779,175
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040655, LOC100040704
Downstream geneZfp804a, LOC100041308, A130030D18Rik, EG624362, LOC433550, LOC269292
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-528K09.T7 (MSMg01no528_k09.b1)MSMg01-528K09.TJ (MSMg01no528_k09.g1)
ACCAG597715AG597716
length734742
length of high quality
(start - end)
683 (52 - 734)616 (81 - 696)
definitionCHROMAT_FILE: MSMg01no528_k09.b1 PHD_FILE: MSMg01no528_k09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:18 2005CHROMAT_FILE: MSMg01no528_k09.g1 PHD_FILE: MSMg01no528_k09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCCCTACACTGGGGCATCCATCCAGCCTTCACAGGACCAA
GGGCCTCTCCTTCCATTGATGCCTGACAAGGCTATCCTCTGCTACATATG
CAGCGGGAGCCATGGGTCCCTCCATGTGTAGTCCTTGGTTGCTGGCTTAG
TCCCTGGGAGCTCTGGGCGTGGATCTGGTTGGTTGAAATTGTTGTTCTTC
CTATGGGGTTGCAAACCCCTTCAGTTCCTTCACTCCTTTCTCTAATTCCT
CCATTGGTAACCCTGTGATTAGTTCAATGGTTGGCTGCAAGCATCTACCT
CTGTATTTGTCAGGCTCTGGCAGAGTCTCTCATGATACTGTTATATCAGT
CTCCTGTCAGCATTCATTTCTTTGCATCCACAATAGTGTCTGGATTTGGT
GGCAGTATACAGGATGGATCCCCAGGTGGGGCAACCTCTGGGTGGCCTTT
CCTTCATTCTTTCCTCTACATTTTGTTTCTGTATTTGCTCTTGTAAGGAT
TTTGTTCCCCTTTCTAAAAAGGGCTGAAGTACCCACTCTTTGGTCTTCCT
TCTTTCTGAATTTCACATGGTCTGTGAATTGTATCTTGGGTATTCCAAGC
TTTTGGGCTAATATCCACTTATCATGAATTCACTGTTTTTAATAGCTGAG
TAGTACTCCATTGTGTAAATGTAACACATTTTCT
NNNCCTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAAGGTTGAGAAATTGGAG
CTGAAGTTGAAATGCGATGTGTGTTAATTGCATAGAAAACAAGAATGAGT
AGAGAATAGGAAAATCTTACACGCGTTCGCGACCGGCCAGGAAAGACGCA
GCAGACCAGAATCTTCTGCGGCAAGACTTTATTGCTTACATCTTCAGGAG
CAAGAGTGCAAGAGAGAGAATGGCGAAACCCCATCCCTTTTAAGGAGAAT
TATTCTCCGCCTAGGACGTATTACTCCTTGATTGGCTGCAGCCCATCGGC
CGAGTTGTCGTCACGGGGAAGGCAGAGCACATGGAGTGGAGAACTACCCT
TGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACAGGATGTCAGC
GCCATCTTGCAACGGCGAATGTGAGGGCGGCTTCCCACAGGAAAATCCCT
GTTCCATGAAAAGAAAAAAGAAAAAACAAAAAACAAAAACAAAACAAACA
AACAAACAAAAAACAGCAGCGTCTTGCTTCCTGACACAGGAGCACTATGC
TGCACTTGACAAACTGAAGTAAGTCATTGTTACTGCAGTTGATCAAACAA
ATATAACAGTGCAAAGAGATTGCTCTGATATATTTCTATATATGCATGGT
AGATAGGTTTACCACTCATCCATGTGTCCTCAGCTATTTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no528_k09.g1 MSMg01no528_k09.g1 CHROMAT_FILE:
MSMg01no528_k09.g1 PHD_FILE: MSMg01no528_k09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:18 2005
         (616 letters)



>mm_chr2_81778160_81779175
          Length = 1016

 Score =  617 bits (319), Expect = 0.0
 Identities = 328/331 (99%), Gaps = 1/331 (0%)
 Strand = Plus / Minus

                                                                        
Query: 287  ggaaggcagagcacatggagtggagaactacccttggcacatgcgcagattatttgttta 346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1016 ggaaggcagagcacatggagtggagaactacccttggcacatgcgcagattatttgttta 957

                                                                        
Query: 347  ccacttagaacacaggatgtcagcgccatcttgcaacggcgaatgtgagggcggcttccc 406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956  ccacttagaacacaggatgtcagcgccatcttgcaacggcgaatgtgagggcggcttccc 897

                                                                        
Query: 407  acaggaaaatccctgttccatgaaaagaaaaaagaaaaaacaaaaaacaaaaacaaaaca 466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896  acaggaaaatccctgttccatgaaaagaaaaaagaaaaaacaaaaaacaaaaacaaaaca 837

                                                                        
Query: 467  aacaaacaaac-aaaaaacagcagcgtcttgcttcctgacacaggagcactatgctgcac 525
            ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 836  aacaaacaaacaaaaaaacagcagcgtcttgcttcctggcacaggagcactatgctgcac 777

                                                                        
Query: 526  ttgacaaactgaagtaagtcattgttactgcagttgatcaaacaaatataacagtgcaaa 585
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776  ttgacaaactgaagtaagtcattgttactgcagttgatcaaacaaatataacagtgcaaa 717

                                           
Query: 586  gagattgctctgatatatttctatatatgca 616
            ||| |||||||||||||||||||||||||||
Sbjct: 716  gaggttgctctgatatatttctatatatgca 686


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space:   609636
Effective search space used:   609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)