BAC Information

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BAC

Clone NameMSMg01-528N21
Chromosome2 (Build37)
Map Location 80,674,503 - 80,674,945
singlet/doubletsinglet
Overlap genenone
Upstream genePde1a, LOC668005, Prdx6-rs1, Dnajc10, Frzb, Nckap1, LOC624223, Dusp19, LOC672381, Nup35
Downstream geneLOC103324, LOC668027, LOC100040624, LOC100040655, LOC100040704
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-528N21.T7 (MSMg01no528_n21.b1)MSMg01-528N21.TJ (MSMg01no528_n21.g1)
ACCAG597882AG597883
length760743
length of high quality
(start - end)		607 (49 - 655)607 (80 - 686)
definitionCHROMAT_FILE: MSMg01no528_n21.b1 PHD_FILE: MSMg01no528_n21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:36 2005CHROMAT_FILE: MSMg01no528_n21.g1 PHD_FILE: MSMg01no528_n21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNGGGACTAAAATTGCGGGCGCTAAACGACTTCCTATATCGAGAGGATC
CGCGGAATTCTCTAGAGTAGCAAATCCCCACTGTTGCCTATGGCCCAAAT
GCTCCATTCCTGCAGCCTTCTCCCTGAAGTTGAAGTTGCTCTTTTCTCTT
TCTCACAGAAAGAACCAACTGTATTGAAAACCAAGGTGGTCCAGCTAAGC
TCCATGCTCTTCTTAAGACTTCCTTCAAGTCAAGATGTACTGCAAGTCTG
CAAGCATCATTAAGGGGAGAAATTCCTTACTTATGATGAGAACTGGAAGG
CATTCTATATGCTACCAGAGGAGATTACTTAAGGTCTACTCAGTGAGATT
AAACACATACTTAACACTGCTTGGATGACCAAGAGCAAGAGACTAGAGAC
CTAGGGTAAAACCAAATACGACTGATCAAAAAGAGAAGAAGGAAGGGGAG
GAGGAATGTAGTGATAAAATAAGTCTTAATGGTATTCTGCTATACTCATA
GTTCAGTACATAGTATAGCCATCATCAGAGAAACTTCCTCCTGCAGTAGT
TATAAACAAACATAGAGACCCACAGCCAGACACTATTCAGAGAGTAAGAC
ACCTTAGAACATCCAGCCCTAAATGGGATGCATGCATCAAATCCCTCTCT
TCAGAACTCAGGGAACCTAATGGAAGAGGAGGTGGAAAGATTTGTGTAGA
GCCAGAGGAGATAGAGGACACCAAGAAAATAAGACCCTTTTAATCAACAA
GAGCGCCCTT

TTTTTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTATTGTTTCTATTTTCATT
TCTAGATCTTGGATGAATTTGTCCATTTCCTTCACCTGTTTGGTTGTGTT
TTCCTATAATTTTTAAGGGATTTTTGTGTTTCGTCTTTAAGGGCTTCTAG
CTGTTTACCTGTGCTCTCCTGTATTGCTTTAAGGGAGTTATTTATGTCCT
TCTTCAAGTCCTCTATCATCATCATGAGAAGTGATTTTAAAATCCAAATC
TTGCTTTTCTGGTGTGATGCTGTATCCAGGACGTGCTATGTTGTGAGAAG
TGGGTTCTGATGATGCCAAGTAACCTTGATTTCTGTTGCTTTTGTTCTTA
CACTTGCCTCCCTCCATCTGGTTCTTGCTAGTGCTACCTGTCCTCAATAT
ATCTGACTGGAGCCTGTCCTTCCTGTGATCCTGGTTGTGTCAGAGCTCCT
GGTAGTAAACCTGCCTTGGGACCCAAGATCCTGTGATACTGCAATCCTGT
GATCCTGGGCATGTTAGATGTTAGAGCAGCTGGGAGTGGAGCTTCCTCTA
CGTATCGTTGACTGGATGCAGAGTTTGGGCCCAAGGTCTGCTCAGGGCTC
ACTCAGCTTCATTATTTACTTCTCAGTATTTGGACAGCAAAGAGGTGGTT
GGAAGCCCCCCAAAGGTATTAGTAGAAAAACATTTTACTATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no528_n21.b1 MSMg01no528_n21.b1 CHROMAT_FILE:
MSMg01no528_n21.b1 PHD_FILE: MSMg01no528_n21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:36 2005
         (607 letters)



>mm_chr2_80674503_80675509
          Length = 1007

 Score =  833 bits (431), Expect = 0.0
 Identities = 440/443 (99%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattctctagagtagcaaatccccactgttgcctatggcccaaatgctccattcctgca 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gaattctctagagtagcaaatccccactgttgcctatggcccaaatgctccattcctgca 384

                                                                       
Query: 67  gccttctccctgaagttgaagttgctcttttctctttctcacagaaagaaccaactgtat 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gccttctccctgaagttgaagttgctcttttctctttctcacagaaagaaccaactgtat 324

                                                                       
Query: 127 tgaaaaccaaggtggtccagctaagctccatgctcttcttaagacttccttcaagtcaag 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tgaaaaccaaggtggtccagctaagctccatgctcttcttaagacttccttcaagtcaag 264

                                                                       
Query: 187 atgtactgcaagtctgcaagcatcattaaggggagaaattccttacttatgatgagaact 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atgtactgcaagtctgcaagcatcattaaggggagaaattccttacttatgatgagaact 204

                                                                       
Query: 247 ggaaggcattctatatgctaccagaggagattacttaaggtctactcagtgagattaaac 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaaggcattctatatgctaccagaggagattacttaaggtctactcagtgagattaaac 144

                                                                       
Query: 307 acatacttaacactgcttggatgaccaagagcaagagactagagacctagggtaaaacca 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 acatacttaacactgcttggatgaccaagagcaagagactagagacctagggtaaaacca 84

                                                                       
Query: 367 aatacgactgatcaaaaagagaagaaggaaggggaggaggaatgtagtgataaaataagt 426
           |||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 83  aataagactgatcaaaaagagaagaagtaaggggaggaagaatgtagtgataaaataagt 24

                                  
Query: 427 cttaatggtattctgctatactc 449
           |||||||||||||||||||||||
Sbjct: 23  cttaatggtattctgctatactc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space:   595209
Effective search space used:   595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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