Query= MSMg01no528_p12.b1 MSMg01no528_p12.b1 CHROMAT_FILE:
MSMg01no528_p12.b1 PHD_FILE: MSMg01no528_p12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:44 2005
(701 letters)
>mm_chr2_165085919_165087019
Length = 1101
Score = 998 bits (516), Expect = 0.0
Identities = 540/548 (98%)
Strand = Plus / Minus
Query: 154 accggcccagaaagagagggtggagaacccatctagtgttagcatgaggtcagggatgga 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1101 accggcccagaaagagagggtggagaacccatctagtgttagcatgaggtcagggatgga 1042
Query: 214 gagagatctgtgttcaaatctcagctctgtggttaatgcctatgtgtctctggccgaact 273
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1041 gagagatctgtgttcaaatctcagctctgtggttaatgcctgtgtgtctctggccgaact 982
Query: 274 accgtacctctcagagccccactgggctcatttcattaaacaaggataatgcttgaactt 333
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 981 accgcacctctcggagccccactgggctcatttcattaaacaaggataatgcttgaactt 922
Query: 334 ctaatctcccagctgccctctgtcctcacggcctggacattcttcctgtactgttgcaag 393
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 921 ctaatctcccagctgccctctgtcctcacagcctggacattcttcctgtactgttgcaag 862
Query: 394 cattacgggccaggaatgatgtgagcagagtcctccagatagggtctgacccctcataag 453
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 861 cattacgggccaggaatgatgtgagcagagtcctccagacagggtctgacccctcataag 802
Query: 454 cgttcagtcagtggtggctctaagtgcgttgtttattccagccgcagccctgttccgaga 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cgttcagtcagtggtggctctaagtgcgttgtttattccagccgcagccctgttccgaga 742
Query: 514 gtcaaggatgcaggtagggaggatcacctggctctttgctcatccttagaaaacgccagc 573
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 741 gtcaaggatgcaggtagggaggatcacctggctctttgctcatccttaaaaaacgccagc 682
Query: 574 cctgcaggcagccttggcttgttgccctccaccagctgagctggtgaccgggacctgcag 633
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cccgcaggcagccttggcttgctgccctccaccagctgagctggtgaccgggacctgcag 622
Query: 634 aagcaatattctccaagcttgcagggctggagaccactggacagacagacagatcctgag 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagcaatattctccaagcttgcagggctggagaccactggacagacagacagatcctgag 562
Query: 694 ctgccttt 701
||||||||
Sbjct: 561 ctgccttt 554
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1101
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1091
Effective search space: 753881
Effective search space used: 753881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no528_p12.g1 MSMg01no528_p12.g1 CHROMAT_FILE:
MSMg01no528_p12.g1 PHD_FILE: MSMg01no528_p12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:44 2005
(668 letters)
>mm_chr2_164944376_164945443
Length = 1068
Score = 1050 bits (543), Expect = 0.0
Identities = 576/587 (98%), Gaps = 2/587 (0%)
Strand = Plus / Plus
Query: 83 aaaa-aaaaaacaaaaacaaaaacaaaaaacaaaaaaaaacccaaaaccaaaaaccaaaa 141
|||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 283 aaaacaaaaaacaaaaacaaaaacaaaaaac-aaaaaaaccccaaaaccaaaaaccaaaa 341
Query: 142 caaaacaaatgaataataacgaattcaaatgtgaaaaactacaacagacaaaaatataaa 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 caaaacaaatgaataataacgaattcaaatgtgaaaaactacaacagacaaaaatataaa 401
Query: 202 agaaaaagcaatgacttgtttcttcatcgtccatctgtctagctgtctgtctgtctatcc 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 agaaaaagcaatgacttgtttcttcatcgtccatctgtctagctgtctgtctgtctatcc 461
Query: 262 acccatctttcatcaattcgttcatccactatcaccggtctacagaccaatccatcaatt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 acccatctttcatcaattcgttcatccactatcaccggtctacagaccaatccatcaatt 521
Query: 322 catccaccctctaccatccctctatagatttatcttcccatccagtctctagctgtcatg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 catccaccctctaccatccctctatagatttatcttcccatccagtctctagctgtcatg 581
Query: 382 gacacacaccttttcatcatccacccatgctccatctaccttctaccatttacccacgga 441
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 gacacacaccttttcatcatccacccatgctccatctaccttctaccatttacccacggg 641
Query: 442 tccgtctgtccatccattctctagccatcacccacacatccattgacttcttgtcaccca 501
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 642 tccgtctgtccatccattctctagccgtcacccacacatccattgacttcctgtcaccca 701
Query: 502 tccactcatatgcacatacatcatactccaacacccatctgtacatccatgtacccatcc 561
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 702 tccactcatatgcacatacatcatactccaacacccatccatacatccatgtacccatcc 761
Query: 562 atttttcagccttgcagcatctacccagctatcttccgtctcctccccatttcccatcca 621
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 762 atttttcagccttgcagcatctacccagctatcttctgtctcctccccatttctcatcca 821
Query: 622 acacctgtctgccctccagcactcacccacccactgttcatttatac 668
||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 822 acacctgtctgcccttcagcactcacccacccactgttcatttatac 868
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space: 696164
Effective search space used: 696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
