Query= MSMg01no529_d10.b1 MSMg01no529_d10.b1 CHROMAT_FILE:
MSMg01no529_d10.b1 PHD_FILE: MSMg01no529_d10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:05 2005
(703 letters)
>mm_chr2_32287125_32288225
Length = 1101
Score = 1015 bits (525), Expect = 0.0
Identities = 558/569 (98%), Gaps = 2/569 (0%)
Strand = Plus / Minus
Query: 4 ggaattctcaaaaatttacgaaaacttaaaaaagcaacagtttgggaaattagttcatac 63
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ggaattctcaaaaataaaggaaaacttaaaaaagcaacagtttgggaaattagttcatac 508
Query: 64 ataatgaacatgtttgtttatctgtaagattctgtgtatttctcacatatacaaatgtat 123
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 507 ataatgaacatgtttgtttatctgtaagattctgtgtatttctcacatatac-aatgtat 449
Query: 124 ctacagaataagctaaacgtggggctgcaatgtagagggctggagattttggagagctgg 183
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 448 ctacagaataagctaaacgtggggctgcaatgtagagggctggagcttttggagagctgg 389
Query: 184 tacctgtagctacatttctttccttgtagtagtgggtaggttgcaggtatccccatcctc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tacctgtagctacatttctttccttgtagtagtgggtaggttgcaggtatccccatcctc 329
Query: 244 tcccaagagtttgatgagcttggaggggtgcatcttttaatgtaattttatttatgtatt 303
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 328 tcccaagagtttgatgagcttggaggggtgcatcttttaatgtaattttattcatgtatt 269
Query: 304 tgtgtaagtatgtgctgttcatgtaaatatctgtgggcacttagtgtgtgaggaatagat 363
||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 268 tgtgtaattatgtgctgttcatgtaaatatctgtgggcac-gagtgtgtgaggaatagat 210
Query: 364 tctaggttcacgctatgggtccgagattgaactcagatcagcaggccttggcaggtgcct 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 tctaggttcacgctatgggtccgagattgaactcagatcagcaggccttggcaggtgcct 150
Query: 424 ttaccagctttaggcatcttcccaggcttggacttacagtttaaaaatagaatgatactg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 ttaccagctttaggcatcttcccaggcttggacttacagtttaaaaatagaatgatactg 90
Query: 484 aacattttgattgccattgggagggatgatagatggtctctacatttgtctgctgttaaa 543
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 89 aacattttgattgctattgggagggatgataggtggtctctacatttgtctgctgttaaa 30
Query: 544 ctaaaaacagctaaagattaatcatggta 572
|||||||||||||||||||||||||||||
Sbjct: 29 ctaaaaacagctaaagattaatcatggta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 703
Length of database: 1101
Length adjustment: 10
Effective length of query: 693
Effective length of database: 1091
Effective search space: 756063
Effective search space used: 756063
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no529_d10.g1 MSMg01no529_d10.g1 CHROMAT_FILE:
MSMg01no529_d10.g1 PHD_FILE: MSMg01no529_d10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:05 2005
(533 letters)
>mm_chr2_32198605_32199537
Length = 933
Score = 969 bits (501), Expect = 0.0
Identities = 525/533 (98%)
Strand = Plus / Plus
Query: 1 acgaggctgcttgttacaagtgctggttcctcagtgtgtgctagattcaagtctccaagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acgaggctgcttgttacaagtgctggttcctcagtgtgtgctagattcaagtctccaagg 260
Query: 61 ataggccacactaagcaacaatatcctgtatgcctgtcatgttttctttcactacagctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataggccacactaagcaacaatatcctgtatgcctgtcatgttttctttcactacagctt 320
Query: 121 gcttgccttagaggttaagaggcagtgccaggtataggccatgggttcgaatcccacctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcttgccttagaggttaagaggcagtgccaggtataggccatgggttcgaatcccacctc 380
Query: 181 tatccttccctggcctggtgtctttggactcattccctcattctgaatgtgtgctcagct 240
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacccttccctggcctggtgcctttggactcattccctcattctgaatgtgtgctcagct 440
Query: 241 atagtggaacatcagacatggtagttaaagggtttgtggggcctctcagcagagagactg 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atggtggaacatcagacatggtagttaaagggtttgtggggcctctcagcagagagactg 500
Query: 301 agtccatgcccaggacatgaagaccacaggggctaccaagaaggattcctcattttcagc 360
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 501 agtccatgcccagaacatgaagaccgcaggggctaccaagaaggattcctcattttcagc 560
Query: 361 ctcttctaggaagacccctaaacttcagcaagaaatctgaaaccccacagaaatctctgc 420
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctcctctaggaggacccctaaacttcagcaagaaatctgaaaccccacagaaatctctgc 620
Query: 421 ctcacctcctctaggtactgaatcctgactgaggcaccatgaaagaaaggcaagatgaaa 480
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctcacctcctctgggtactgaatcctgactgaggcaccatgaaagaaaggcaagatgaaa 680
Query: 481 gcaaggaaaacagcagaatagagggcaccctactcccccatcactgccctgaa 533
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcaaggaaaacagcagaatagagggcaccctactcccccatcactgccctgaa 733
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space: 482729
Effective search space used: 482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
