Query= MSMg01no529_j21.b1 MSMg01no529_j21.b1 CHROMAT_FILE:
MSMg01no529_j21.b1 PHD_FILE: MSMg01no529_j21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:40 2005
(667 letters)
>mm_chr2_92493642_92494708
Length = 1067
Score = 998 bits (516), Expect = 0.0
Identities = 540/548 (98%), Gaps = 1/548 (0%)
Strand = Plus / Minus
Query: 5 gaattcttataaatataatcccatctcagccgtgatttacaacacaattttccggacact 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 547 gaattcttataaatagaatcccatctcagccgtgatttacaacacaattttccagacact 488
Query: 65 ttgtcttcattttggagtgatgtttctaatggtttttctgtagaactcaccttcctttca 124
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ttatcttcattttggagtgatgtttctaatggtttttctgtagaactcaccttcctttca 428
Query: 125 gaagtacagagaatgttccagtcggataaagctgtggaaactgcctcttcctgacacttc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gaagtacagagaatgttccagtcggataaagctgtggaaactgcctcttcctgacacttc 368
Query: 185 atctggaggaagtgaaggtacagcgagccccagtgaggattgatgttcgttgactgcatc 244
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 367 atctggaggaagtgaaggtacagagagccccagtgaggattgatgttcgttgactgcatc 308
Query: 245 tagaactcaggttctattgtcagagagaaagaaatgggatgcaaggcagatgaaggagct 304
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 307 tagaactcaggttctattgtcagagagaaagaaatgagatgcaaggcagatgaaggagct 248
Query: 305 gatataaggtctgtcaacccagctgataagagactgcctcaaagcctccaggggctcctg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gatataaggtctgtcaacccagctgataagagactgcctcaaagcctccaggggctcctg 188
Query: 365 tgacctggcccctccccatctctctgacctcattatccactctcttcctcacgcatttct 424
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 187 tgacctggcccctccccatctctctgacctcatcatccactctcttcctcacgcatttct 128
Query: 425 ccttgccttgctagttcccacctacactcttcggggtctctgcccctgctgctcccccgg 484
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 ccttgccttgctagctcccacctacactcttcggggtctctgcccctgctgctcccccgg 68
Query: 485 cctggaaagctgttccctcttacttgttcccgtatgctgtcagtgtctgtcacattgctt 544
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 -ctggaaagctgttccctcttacttgttcccgtatgctgtcagtgtctgtcacattgctt 9
Query: 545 tcttcccc 552
||||||||
Sbjct: 8 tcttcccc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space: 694449
Effective search space used: 694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no529_j21.g1 MSMg01no529_j21.g1 CHROMAT_FILE:
MSMg01no529_j21.g1 PHD_FILE: MSMg01no529_j21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:40 2005
(604 letters)
>mm_chr2_92361852_92362855
Length = 1004
Score = 1137 bits (588), Expect = 0.0
Identities = 600/604 (99%)
Strand = Plus / Plus
Query: 1 tcagttggaaaatggagggctctctaacatgttggagcaggacaaacaagctttgccttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagttggaaaatggagggctctctaacatgttggagcaggacaaacaagctttgccttt 260
Query: 61 ccccctccctctctgctaaaatctcttaattgacattcctggagctagcccccaaggtcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccccctccctctctgctaaaatctcttaattgacattcctggagctagcccccaaggtcc 320
Query: 121 attcccttatctggctgctgactcattcctgagacaaaacagcaaagtccaacaatcaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attcccttatctggctgctgactcattcctgagacaaaacagcaaagtccaacaatcaaa 380
Query: 181 attcagtttttggtgaaaatgcccaatcaggacttaccaggactcaccatagcacagact 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 attcagtttttggtgaaaatgcccaatcaggacttaccaggactcgccatagcacagact 440
Query: 241 ccctgtctttcttcttaaaaacccactcctgcaaaaaaacaatgactgctgctgcccact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccctgtctttcttcttaaaaacccactcctgcaaaaaaacaatgactgctgctgcccact 500
Query: 301 gtaggcctccaccagaggcagcccccaaccccatcaacttgctccactggggtaacacat 360
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 501 gtaggcctccaccagaggcagcccctaaccccatcaacttgctccactggggtaacatat 560
Query: 361 cttcattgggctgagaatttgatgtctgggtgcgtctgtcttgcaccaactcggagagcc 420
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctccattgggctgagaatttgatgtctgggtgcgtctgtcttgcaccaactcggagagcc 620
Query: 421 cacttctcccttgcactgccagcttgatgacttgattcatagaatctacataacaaaagg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cacttctcccttgcactgccagcttgatgacttgattcatagaatctacataacaaaagg 680
Query: 481 caaggcttacacttggggtcccagtgactggcaagtggagataggtttcttggtgccccc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caaggcttacacttggggtcccagtgactggcaagtggagataggtttcttggtgccccc 740
Query: 541 tcaccccccacccccgtggctggccagcttatcctccaggccagtgagatattctatttt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcaccccccacccccgtggctggccagcttatcctccaggccagtgagatattctatttt 800
Query: 601 taaa 604
||||
Sbjct: 801 taaa 804
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space: 590436
Effective search space used: 590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
