BAC Information

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BAC

Clone NameMSMg01-529L10
Chromosome2 (Build37)
Map Location 89,880,299 - 89,880,678
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1218, Olfr1219, Olfr1220, Olfr1221, Olfr1222, Olfr1223, Olfr1224-ps1, Olfr1225, LOC435676, Olfr1226, LOC100042983, GA_x5J8B7TTH1T-1160-261, Olfr1227-ps1, Olfr1228, Olfr1229, Olfr1230, Olfr1231, Olfr1232, Olfr1233, Olfr1234, Olfr1235-ps1, GA_x5J8B7W62NC-668773-668438, Olfr1237-ps1, Olfr1238, Olfr1239, Olfr1240, Olfr1241, Olfr1242, Olfr1243, Olfr1244-ps1, Olfr1245, Olfr1246, Olfr1247, Olfr1248, Olfr1249, Olfr1541-ps1, Olfr1250, Olfr1251, GA_x5J8B7TT7VM-20-924, Olfr1252, GA_x5J8B7W62NC-992588-991951, Olfr1253-ps1, Olfr1254, Olfr1255, Olfr1256, Olfr48, Olfr1257, Olfr1258, Olfr1259, Olfr1260, Olfr1261, Olfr1262, Olfr1263, Olfr1264, Olfr1265
Downstream geneOlfr140, Olfr1266-ps1, Olfr1267-ps1, Olfr1268-ps1, Olfr1269, Olfr32, LOC100043090, Olfr1270, LOC627525, LOC100043096, Olfr1506, Olfr142, Olfr1271, Olfr1272, Olfr1273, LOC100042690, LOC100043113, LOC668629, GA_x5J8B7W2BV0-3116-4045, Ptprj, 4933423P22Rik, Nup160, Fnbp4, Rpl30-ps3, Agbl2, Mtch2, C1qtnf4, Ndufs3, Kbtbd4, Ptpmt1, Cugbp1, LOC279067, Rapsn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-529L10.T7 (MSMg01no529_l10.b1)MSMg01-529L10.TJ (MSMg01no529_l10.g1)
ACCAG598529AG598530
length742738
length of high quality
(start - end)		568 (50 - 617)594 (145 - 738)
definitionCHROMAT_FILE: MSMg01no529_l10.b1 PHD_FILE: MSMg01no529_l10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:47 2005CHROMAT_FILE: MSMg01no529_l10.g1 PHD_FILE: MSMg01no529_l10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCAGGCTATAAAATGTTATCCAAGATTTATATGGTACCAGTT
ATCCTCTAGTGGTCTAACATGGAGTTTTAGGGATGTGGTCTTACATATGC
ATACTATAGTGACAACGACCTATCAGTCATTTAAACAAATTATGTTTTAT
TTTGTGTTTATATAAAAAAGAATGCTCATTTTTCTCACATAATATGTCAT
TATTATAGTTTCCCTTCCCTTTACTCTTTCCAGTTCCTCCCTACCTTCTC
TCCCATCCAGATTCAACCATCTTCAGTCTCTCATTTAAAAAAAAAAGCTG
TTTTCTAAGGGATTTTAAGAAAATAAAACAAAAACTAACACACTGGAATA
GGAAAAGACAATAAAATAGAAGGAAATTAGTTCATTAACGGACGAAAGAA
ACAGATATAGATGCAGAGATTTGTACACTTAGGTATCCCATAAAAACACT
AAACTGAAATCCTTCAAATATATGGGAAAAACTGTATCATCAAATGAGAG
AACATATATGTATGTGTATATATATATATATGTGTGTGTGTGTATGTGTG
TGTGTGTGTGTGTGTGTNNNNNNNNNNNNNNNNNNNNNNTTNNTTNTTTT
TNNTTTTTTTTTTTTNNTTTNTTTTTTTTTTTTTTNTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNN

NNNNCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTCCCGCAAATCACACCTGAAGAATACCGA
ATGGCAGAGAAGCACCCAAAGAAATGTTCTCTCTACAAAGACATCAGGGA
AATGCAAATCAAAACAACCCTGAGATCCCACCTCACACCAGTCAGAATGG
CTAAGATCAAAAACTCAGGTAACAGCAGATGCTGGCAAGGATGTGGAGAA
AGAGGAACACTCCTCCATTGTTGGTAGGAATGCAAGCTGGTACAACCACT
CTGAAAATCAGTTTGCTGATTCCTCAGAAAATTGGTTATAGTACTACCTG
AGGACCCAGCTATACCACTTCTGGGCACCCAGAATATGCTATATCATGTA
ATAAGGACACATGTTCCACTGTGTTCACAGCAGCCTCATTTAGAGTAGTC
AGAAGCTGAAAAGAACCCAGATGTCCCTCAGCAGAGAAATGGATATAGAA
TTGTGGTATATCTTGGCTGATTTTCAATTCACTGAGAGAGACATAGCCAA
GAACTTCTGGCCTTCTTGCTGGTGCCCTTTGCAGACTCCTGCTGAGGCTG
AAGCCTGGCTGTCTCAGTCAGGTAGTGCCACTGCTGCTGATTTGTGTTTG
CTATCCTGACTCTACTGAACTGAAATGCTGGTATATTTGTGAAGTGTTTG
CAAGTGGATCAAGCTGCCACTGATAACCTCTGAATTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no529_l10.b1 MSMg01no529_l10.b1 CHROMAT_FILE:
MSMg01no529_l10.b1 PHD_FILE: MSMg01no529_l10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:47 2005
         (568 letters)



>mm_chr2_89880299_89881266
          Length = 968

 Score =  719 bits (372), Expect = 0.0
 Identities = 378/380 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaggctataaaatgttatccaagatttatatggtaccagttatcctctagtggt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gaattccaggctataaaatgttatccaagatttatatggtaccagttatcctctagtggt 321

                                                                       
Query: 65  ctaacatggagttttagggatgtggtcttacatatgcatactatagtgacaacgacctat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ctaacatggagttttagggatgtggtcttacatatgcatactatagtgacaacgacctat 261

                                                                       
Query: 125 cagtcatttaaacaaattatgttttattttgtgtttatataaaaaagaatgctcattttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cagtcatttaaacaaattatgttttattttgtgtttatataaaaaagaatgctcattttt 201

                                                                       
Query: 185 ctcacataatatgtcattattatagtttcccttccctttactctttccagttcctcccta 244
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 200 ctcacataatatgtcattattatggtttcccttccctttactctttccagttcctcccta 141

                                                                       
Query: 245 ccttctctcccatccagattcaaccatcttcagtctctcatttaaaaaaaaaagctgttt 304
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 140 ccttctctcccatccagattcaaccatcttcagtctctcattttaaaaaaaaagctgttt 81

                                                                       
Query: 305 tctaagggattttaagaaaataaaacaaaaactaacacactggaataggaaaagacaata 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80  tctaagggattttaagaaaataaaacaaaaactaacacactggaataggaaaagacaata 21

                               
Query: 365 aaatagaaggaaattagttc 384
           ||||||||||||||||||||
Sbjct: 20  aaatagaaggaaattagttc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space:   534564
Effective search space used:   534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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