Query= MSMg01no529_o11.b1 MSMg01no529_o11.b1 CHROMAT_FILE:
MSMg01no529_o11.b1 PHD_FILE: MSMg01no529_o11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:02 2005
(702 letters)
>mm_chr2_178839112_178840216
Length = 1105
Score = 1315 bits (680), Expect = 0.0
Identities = 694/700 (99%), Gaps = 3/700 (0%)
Strand = Plus / Minus
Query: 5 gaattcttcactcagataatttgatcactgggggccatgattcttctttctggcaaattg 64
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 904 gaattcttcactcagataatttgatcactgggggccgtgattcttctttctggcaaattg 845
Query: 65 tgaggagagatgacaagatcgagggaggcccagtctgatttcactaatcacacctcgaag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 tgaggagagatgacaagatcgagggaggcccagtctgatttcactaatcacacctcgaag 785
Query: 125 gtttaacctggtcacatcagttctttatcgcacagcctgaggagggctaataatgagctt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 gtttaacctggtcacatcagttctttatcgcacagcctgaggagggctaataatgagctt 725
Query: 185 gtttttttctctcttgtttgaagtatgttgtgtagagagaaatagacatctctttccacc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 gtttttttctctcttgtttgaagtatgttgtgtagagagaaatagacatctctttccacc 665
Query: 245 agctctgcgtgtttactctggagtgtgaataaaagcaactatctgctgggagcctaacga 304
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 664 agctctgcgtgtttactctggagtgtgaataaaagcaactatctgccgggagcctaacga 605
Query: 305 atcattgagtaagatccagaaagagatgaggctaatcaggtatgcggcgcaggaccctgg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 atcattgagtaagatccagaaagagatgaggctaatcaggtatgcggcgcaggaccctgg 545
Query: 365 caaggcagacagggtctgcatctacctagagtcttggcctagg---acaagtgacagcaa 421
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 544 caaggcagacagggtctgcatctacctagagtcttggcctaggacaacaagtgacagcaa 485
Query: 422 cagtcgtctatatctgtgattaatttatcaaaccaagcagctggtttcctttgaaattgt 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 cagtcgtctatatctgtgattaatttatcaaaccaagcagctggtttcctttgaaattgt 425
Query: 482 gtcttttcctaccttgctcttacgttcttttaaacaaagagaagctgggcattatcacaa 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gtcttttcctaccttgctcttacgttcttttaaacaaagagaagctgggcattatcacaa 365
Query: 542 acatcagtgtctccctcagtaacaaccctcaagcctgctgctgtagacctaacccatgat 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 acatcagtgtctccctcagtaacaaccctcaagcctgctgctgtagacctaacccatgat 305
Query: 602 cgtgacctggactcacatgcgtagtgtgtccctcttgaacctgactcctgtgctgtacac 661
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 304 cgtgacctggactcacatgcatagtgtgtccctcttgaacctgactcctgtgctgtacac 245
Query: 662 agcagggcctggagaaggttccaccctggagacttggggg 701
||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 agcagggcctggagaaggttccaccctggagacttggggg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1105
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1095
Effective search space: 757740
Effective search space used: 757740
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no529_o11.g1 MSMg01no529_o11.g1 CHROMAT_FILE:
MSMg01no529_o11.g1 PHD_FILE: MSMg01no529_o11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:02 2005
(679 letters)
>mm_chr2_178679190_178680268
Length = 1079
Score = 1282 bits (663), Expect = 0.0
Identities = 675/679 (99%)
Strand = Plus / Plus
Query: 1 tttcttttaaaggtttgtttattcttagtttatgtacatgagtgtttatctatacatatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttcttttaaaggtttgtttattcttagtttatgtacatgagtgtttatctatacatatg 260
Query: 61 tatgtctgccatatgcgtgcagtactttggaggccagaggggccattagattccctataa 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatgtctgccatatgtgtgcagtactttggaggccagaggggccattagattccctataa 320
Query: 121 ctggagttgtaagctcatgtgaaacacaccgtgtgggcactgacctaaacaagaacagcc 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 ctggagttgtaagctcatgtgaaacacaccgcgtgggcactgacctaaacaagaacagcc 380
Query: 181 agttctcttaaccagcccacctctccagcccaaaggtgaaataattatttctttagtttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agttctcttaaccagcccacctctccagcccaaaggtgaaataattatttctttagtttt 440
Query: 241 ctactagtaatcttttctaaaaattccagtttctgtaagttctctcaaaagctaaggcaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctactagtaatcttttctaaaaattccagtttctgtaagttctctcaaaagctaaggcaa 500
Query: 301 atgcacagggttgtcttccgacatctctgtaggcaaatgtccgtatcattggatcacaag 360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgcacagggttgccttccgacatctctgtaggcaaatgtccgtatcattggatcacaag 560
Query: 361 aaaggtagaggttgaggggaggctgctccaaccagcttcccatgctgacgtgagccttca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaggtagaggttgaggggaggctgctccaaccagcttcccatgctgacgtgagccttca 620
Query: 421 tctctgcccaagtgtccactcagtggttggaaggaacaccccacaccagtattttagcat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctctgcccaagtgtccactcagtggttggaaggaacaccccacaccagtattttagcat 680
Query: 481 cactaatagggtaggctggaatgctgagaagagattcttagatcagagatcaagatgagg 540
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 681 cactaatagggtaggctggaatgctgagaagagagtcttagatcagagatcaagatgagg 740
Query: 541 acaggctatgttgcaaagaccaagatgaaggaccagttcaggtaagggcttaattaggat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acaggctatgttgcaaagaccaagatgaaggaccagttcaggtaagggcttaattaggat 800
Query: 601 tgtcacacatgttaattgcctgtgattggcaccacacagtcagcttatgctaccactcgc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgtcacacatgttaattgcctgtgattggcaccacacagtcagcttatgctaccactcgc 860
Query: 661 ccagtgattggctgggctc 679
|||||||||||||||||||
Sbjct: 861 ccagtgattggctgggctc 879
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space: 715161
Effective search space used: 715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
