NNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAA
ATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGA
GATTCCACCTCATACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGAC
AGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTG
GTGGGAGTGTAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGTTTCC
TCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTG
GGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCAC
TATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTA
GATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACA
ATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTTCTAGC
CAAATGGATGGACCTGGAGGGCATCATCCTGAGTCAGGTAACACATTCAC
AAAGAAACTCACACAATATGTACTCACTGATACGTGGATATTAGCCCCAA
ACCTAGGATACCCAAGATATAAGATATAATTTGCTAAACACATGAAACTC
AAGAAGAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGATTTGG
GAACAAACACCCATGGAN

NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGGGCCAGGAGGCAGGAGAGGGTGG
GTTGGGGAGCAGGGCAGGGCTTTGGGGATAGCATTTGAAATGTAAATAAA
TAAAATATCTAAAAAAAATCTTTCCCTGCCACTAATTTCAATATAAAGAA
ACTTAATTCATTACTCAATTATTATACCCTATGTATTTATGTGCCCCCAA
CCTCACTTTATACATCGAAACATTGTTTCCAATGTGTGGATATGATGAAC
TTTCACCTTTTAAAGGTCATTAAAGATGACTGTTCTTACAAAAGGGATCC
TGTGTCATGGAGGATGATTCAAGTGGTAAAGTGGCAAGCATGAGACCTGA
AATAAGATCCCCAGCCCTCAGATCAATGTCTGCTACCCTCTCTGTACTTA
AAGCACTGGATATAATGGGGAGACTAATGGTTTTCTCTTTGGCCACTCGG
TCTACCCCAAAGTGCCGCAAGCTTTAAGATCATTGAGAGACCTGTCTCAA
AAAACAAAACCAACCAACCAAACAAATAAAAGCAAATGGATAGAGAAATG
TGATTAAAAAAGAAAGTCCATGTTAGCCTTTGTGACAACATTGTAAAAAG
TCCAATGTGCATACTTACGCATAAACCACAAAGCCCAAACCCACCAGACA
AGCAAACAAGTAAGCAAATAAGTCAGTCAGCAGGATCCTATGCAGTGAGA
TATN

Query= MSMg01no529_p11.g1 MSMg01no529_p11.g1 CHROMAT_FILE:
MSMg01no529_p11.g1 PHD_FILE: MSMg01no529_p11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:07 2005
         (675 letters)



>mm_chr2_42473688_42474762
          Length = 1075

 Score = 1056 bits (546), Expect = 0.0
 Identities = 570/578 (98%), Gaps = 1/578 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagggccaggaggcaggagagggtgggttggggagcagggcagggctttggggatagcat 60
           ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 578 cagggccaggaggcaggagagagtgggttggggatcagggcagggctttggggatagcat 519

                                                                       
Query: 61  ttgaaatgtaaataaataaaatatctaaaaaaaatctttccctgccactaatttcaatat 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ttgaaatgtaaataaagaaaatatctaaaaaaaatctttccctgccactaatttcaatat 459

                                                                       
Query: 121 aaagaaacttaattcattactcaattattataccctatgtatttatgtgcccccaacctc 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 458 aaagaaacttaattcattactcaattgttataccctatgtatttatgtgcccccaacctc 399

                                                                       
Query: 181 actttatacatcgaaacattgtttccaatgtgtggatatgatgaactttcaccttttaaa 240
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 398 actttatacatcgaaacattgtttacaatgtgtggatatgatgaactttcaccttttaaa 339

                                                                       
Query: 241 ggtcattaaagatgactgttcttacaaaagggatcctgtgtcatggaggatgattcaagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ggtcattaaagatgactgttcttacaaaagggatcctgtgtcatggaggatgattcaagt 279

                                                                       
Query: 301 ggtaaagtggcaagcatgagacctgaaataagatccccagccctcagatcaatgtctgct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ggtaaagtggcaagcatgagacctgaaataagatccccagccctcagatcaatgtctgct 219

                                                                       
Query: 361 accctctctgtacttaaagcactggatataatggggagactaatggttttctctttggcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 accctctctgtacttaaagcactggatataatggggagactaatggttttctctttggcc 159

                                                                       
Query: 421 actcggtctaccccaaagtgccgcaagctttaagatcattgagaga-cctgtctcaaaaa 479
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 158 actcggtctaccccaaagtgccgcaagctttaagatcattgagagaccctgtctcaaaaa 99

                                                                       
Query: 480 acaaaaccaaccaaccaaacaaataaaagcaaatggatagagaaatgtgattaaaaaaga 539
           |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98  acaaaaccaaacaaacaaacaaataaaagcaaatggatagagaaatgtgattaaaaaaga 39

                                                 
Query: 540 aagtccatgttagcctttgtgacaacattgtaaaaagt 577
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 38  aagtccatgttagcctttgtgacaacattgtaaaaagt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space:   708225
Effective search space used:   708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)