NNAAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCC
GCGGAATTCAAGATTATTGTGCAAGAATCCAGAGATATTTCCAAAGCAAG
TACATGTAGGTTGTTTGAAGCAAAAAATACTGTTTTTACTTTAAAGGTAT
ATACCTAATATATTCTGTTGTTTTGATTTCTCTTCATTTACTTATGTTTA
ATTCACATTGAAAAATTAGAAGAGTAAACCAGTTAGGTAACTTTTGCATC
CATCTGTGGACTTCCACCAGTAGTCAGAAGTGGGGACAATGTGTGAAAGG
CCAAATATCCTTGAAACAATTACGTTTACCATTTTATATTAAAGCAATGG
TATAAGTTTCACAGTTATACTGGCTTTTACTTTTGTTTCAAAGCTTCTGT
TTTGTCTCAAGCTACCTTAAAATGCAGTTATGTTTCTACATTAAAGTGGA
CTAAAATCTATGAACATAGTAATTAAATTACATGTCATCATTAAGAACAA
ATATTCTACAAATTAATTAATTTGGTCAAAATGATAGTAAAACTCAATTT
ATTCTCTTTACCCTTCAGCCAACAAATTACTCCAACCCAGTATATGCAAA
ATTATATATGGATGGACAGAACTGTCGAAACTCCTTAGCAAGTGTGGATG
AACGGAAAGAACTTCTTCCAAAGAAAATTGAAATTGGCATCAGAGAAACA
GTAGCATAATGAAGGACACTTTTCTATGCTGTATAAATGTATAAAATA

NCACAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGTACCATATTGAATAGGTGT
GGAGAGAGTGGACAACCTTGTCTTGTTCCTGATTTTAGTAAAAAAAATAT
TGCTTTCTCTCCCTTTAATTTGATGTTGACTATATGTTTGTTGTAAACTA
ACTTTATTATATTTAGGTATGTCCTTTGTATCTCTAATCTAATTTCTCCA
TGACATTCATCATGAAGGAGTGTTGGATTTTGTCAAAGGCCTTTTCTGCC
TCTAATAAGATGAACATTTGTTTGTTTTGCTTTTAGTTTATATGGTGGAT
TGGTTTTAGTGATTTTTTTTCAGATGTTGAACTATCCCTGTATCTCTAGA
ATAAAGCCTCATTGATCATGGTAGATGATCTTTTTGATATGTTTGTGGAT
TTGTTTTGAAAATATTTTTGATAATTATTGCATCTGTTTTCATAAGGGAA
ATTAGGTCTGCAATTCTCTTTCTTTGTTGGACTTTTATGTAGTTTGGCTA
TCAGAGTAACTGTGGCCTCATAAAACCAATTGAACAATATTCCTCCTATT
TAGATTTGTGGAAGAATTTGAGGTATATTGGCATTAGCTTTCCTTTGAAA
GTCTGGTAGAATTCCCCACTAAAACCATATGACTCTGAGCATTTTGCATT
GTGAATCTTCTAATAACTGCTTCCTTTACACTGGGGTTGTACATTTACTT
AAATTGCTTG

Query= MSMg01no530_i02.b1 MSMg01no530_i02.b1 CHROMAT_FILE:
MSMg01no530_i02.b1 PHD_FILE: MSMg01no530_i02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:51 2005
         (646 letters)



>mm_chr2_40452264_40453307
          Length = 1044

 Score = 1129 bits (584), Expect = 0.0
 Identities = 626/640 (97%), Gaps = 2/640 (0%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcaagattattgtgcaagaatccagagatatttccaaagcaagtacatgtaggttg 66
           |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 gaattcaagattattg-ggaagaatccagagatatttccaaagcaagtacatgtaggttg 786

                                                                       
Query: 67  tttgaagcaaaaaatactgtttttactttaaaggtatatacctaatatattctgttgttt 126
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 785 tttgaagcaaaaaatactgtttttactttaaagatatatacctaatatattctgttgttt 726

                                                                       
Query: 127 tgatttctcttcatttacttatgtttaattcacattgaaaaattagaagagtaaaccagt 186
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 725 tgatttatcttcatttacttatgtttaattcacattgaaaaattagaagagtaaaccaat 666

                                                                       
Query: 187 taggtaacttttgcatccatctgtggacttccaccagtagtcagaagtggggacaatgtg 246
           |||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 665 taggtaacttttgcattcatctgtggacttgcaccagtagtcagaggtggggacaatgtg 606

                                                                       
Query: 247 tgaaaggccaaatatccttgaaacaattacgtttaccattttatattaaagcaatggtat 306
           |||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 605 tgaaaggccagatatccttgaaacaattatgtttaccattttatattaaagctatggtat 546

                                                                       
Query: 307 aagtttcacagttatactggcttttacttttgtttcaaagcttctgttttgtctcaagct 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 aagtttcacagttatactggcttttacttttgtttcaaagcttctgttttgtctcaagct 486

                                                                       
Query: 367 accttaaaatgcagttatgtttctacattaaagtggactaaaatctatgaacatagtaat 426
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 accttaaaatgtagttatgtttctacattaaagtggactaaaatctatgaacatagtaat 426

                                                                       
Query: 427 taaattacatgtcatcattaagaacaaatattctacaaattaattaatttggtcaaaatg 486
           ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 425 taaatgacatgtcatcattaagaacaa-tattctacaaattaattaatttggtcaaaatg 367

                                                                       
Query: 487 atagtaaaactcaatttattctctttacccttcagccaacaaattactccaacccagtat 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 atagtaaaactcaatttattctctttacccttcagccaacaaattactccaacccagtat 307

                                                                       
Query: 547 atgcaaaattatatatggatggacagaactgtcgaaactccttagcaagtgtggatgaac 606
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 atgcaaaattatatatggatggacagaactgtcgaaactccttagcaagtgtggatgaac 247

                                                   
Query: 607 ggaaagaacttcttccaaagaaaattgaaattggcatcag 646
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ggaaagaacttcttccaaagaaaattgaaattggcatcag 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1044
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1034
Effective search space:   657624
Effective search space used:   657624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)