Query= MSMg01no531_d14.b1 MSMg01no531_d14.b1 CHROMAT_FILE:
MSMg01no531_d14.b1 PHD_FILE: MSMg01no531_d14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:47 2005
(585 letters)
>mm_chr2_70583125_70584109
Length = 985
Score = 1081 bits (559), Expect = 0.0
Identities = 573/585 (97%), Gaps = 12/585 (2%)
Strand = Plus / Plus
Query: 1 atattgaacctaatttaaaatttataatcctttaatgaaagaaaatccaaactaaaaagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atattgaacctaatttaaaatttataatcctttaatgaaagaaaatccaaactaaaaagt 260
Query: 61 gcagcaatgaggctggagaggtggatcagggcttacaaacacacattactcttccaaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcagcaatgaggctggagaggtggatcagggcttacaaacacacattactcttccaaagg 320
Query: 121 accagcacccgcagcccaaagttgcctgttacttcaggtctgacgcgcgtgcgcacacac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accagcacccgcagcccaaagttgcctgttacttcaggtctgacgcgcgtgcgcacacac 380
Query: 181 atacatacaaacacaatcaaaaaaataacttttaaaaattgtaaacattactaacttcac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atacatacaaacacaatcaaaaaaataacttttaaaaattgtaaacattactaacttcac 440
Query: 241 aagattctgaaatgcaaaaccatctgtccactgttctgtaaaggaagcgccgtgtctaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagattctgaaatgcaaaaccatctgtccactgttctgtaaaggaagcgccgtgtctaac 500
Query: 301 tgtggtaaagtgcccaaggcgcaaccgatcttgcatactcttttctctgctagacaattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtggtaaagtgcccaaggcgcaaccgatcttgcatactcttttctctgctagacaattt 560
Query: 361 ttcttgtgtactctgaaaatgagaaaaaaaatcattatagtcattcaaaattttccatcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcttgtgtactctgaaaatgagaaaaaaaatcattatagtcattcaaaattttccatcc 620
Query: 421 atccatctatccattcattcattcattcattcattcattcattcatgatacagggtttct 480
|||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 621 atccatctatccattcattcattcattcattcat------------gatacagggtttct 668
Query: 481 ctgtgtagccctggctggcctagaatctactctgtagaccaggctggcattgagctcaga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 ctgtgtagccctggctggcctagaatctactctgtagaccaggctggcattgagctcaga 728
Query: 541 gattcatctgcctcggcctccccagggctgggattaaagacatga 585
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 gattcatctgcctcggcctccccagggctgggattaaagacatga 773
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space: 560625
Effective search space used: 560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no531_d14.g1 MSMg01no531_d14.g1 CHROMAT_FILE:
MSMg01no531_d14.g1 PHD_FILE: MSMg01no531_d14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:47 2005
(665 letters)
>mm_chr2_70710015_70711079
Length = 1065
Score = 1247 bits (645), Expect = 0.0
Identities = 660/665 (99%)
Strand = Plus / Minus
Query: 1 aagttctctgaactgtagagctgtctctctcaaagaactttttagtttccaagaatgtga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 aagttctctgaactgtagagctgtctctctcaaagaactttttagtttccaagaatgtga 806
Query: 61 caggggacaagaagcagggaaatcaacctgaagggaggtttccatgcaccaaaaggatgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 caggggacaagaagcagggaaatcaacctgaagggaggtttccatgcaccaaaaggatgt 746
Query: 121 cacagcaaagatcctcagagatgatgtatctggatgtgaagaactgccttccaggctgac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cacagcaaagatcctcagagatgatgtatctggatgtgaagaactgccttccaggctgac 686
Query: 181 tgctggcagctggcggctgctgtccttcctgctgggtcagactgctgctctcccagactg 240
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgctggcggctggcagctgctgtccttcctgctgggtcagactgctgctctcccagactg 626
Query: 241 gcagctaactgccctttctcgctgcagtctcttgcttctctcttgacatttcagggcatg 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gcagctaactgtcctttctcgctgcagtctcttgcttctctcttgacatttcagggcatg 566
Query: 301 cttagtgagctgaccttgccccaactaaattgccatcaagttctgcccggtaaagtggtc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cttagtgagctgaccttgccccaactaaattgccatcaagttctgcccggtaaagtggtc 506
Query: 361 cagtttaaagtctctagattgtacagatgcaaagataaaacagaatgtgggagaagctgc 420
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 505 cagtttaaagtctctagattgtacggatgcaaagataaaacagaatgtgggagaagctgc 446
Query: 421 agagtgtgtatccctgggctctaagattggctggctgtttgatttgcctttatctgcaca 480
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 445 agagtgtgtatccctgggctctaagactggctggctgtttgatttgcctttatctgcaca 386
Query: 481 gtggagttgttgtccattctgaagatggggcgtgtttttaagacaatcctaaaacatcac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtggagttgttgtccattctgaagatggggcgtgtttttaagacaatcctaaaacatcac 326
Query: 541 ctaagcatggtcccagggagagcaagctaaaggccaaagcgttaagagtcaggattgggg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctaagcatggtcccagggagagcaagctaaaggccaaagcgttaagagtcaggattgggg 266
Query: 601 tttcaggaagagatgggaagccttgttcagccagagtcacccagaaagagcacagtattg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttcaggaagagatgggaagccttgttcagccagagtcacccagaaagagcacagtattg 206
Query: 661 accat 665
|||||
Sbjct: 205 accat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space: 691025
Effective search space used: 691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
